View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_29 (Length: 271)
Name: NF18996_low_29
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_29 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 17752024 - 17751754
Alignment:
| Q |
1 |
ccataactacaaggatgttaatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaaccca |
100 |
Q |
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| T |
17752024 |
ccataactacaaggatgttaatctgcatttgacaatctgctcctaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaaccca |
17751925 |
T |
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| Q |
101 |
aaatattctaagatctatgcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactact |
200 |
Q |
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| T |
17751924 |
aaatattctaagatctatgcagtcaataaaggatggcgaagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactact |
17751825 |
T |
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| Q |
201 |
tcaaagtttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcacggacactcctc |
271 |
Q |
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| T |
17751824 |
tcaaagtttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcgcggacactcctc |
17751754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 17761011 - 17760741
Alignment:
| Q |
1 |
ccataactacaaggatgttaatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaaccca |
100 |
Q |
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| T |
17761011 |
ccataactacaaggatgttaatctgcatttgacaatctgctcctaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaaccca |
17760912 |
T |
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| Q |
101 |
aaatattctaagatctatgcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactact |
200 |
Q |
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| T |
17760911 |
aaatattctaagatctatgcagtcaataaaggatggcgaagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactact |
17760812 |
T |
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| Q |
201 |
tcaaagtttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcacggacactcctc |
271 |
Q |
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| T |
17760811 |
tcaaagtttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcgcggacactcctc |
17760741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 17737872 - 17737641
Alignment:
| Q |
20 |
aatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaa-ttaaaaacccaaaatattctaagatctat |
118 |
Q |
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| T |
17737872 |
aatctgcaattggcaatctgctcccaacatttttcctaattagggcaaccaatcgatcttacatatacaaattaaatacccaaaatattgtaagatctat |
17737773 |
T |
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| Q |
119 |
gcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaagtttaatgaaaca |
218 |
Q |
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| T |
17737772 |
atgatcattgaagaacggcggagtgtaaccaaaaccaccaaaatgatatagctgtatagtgtgtagcggtatggccactacttcaaagtttaatgaaaca |
17737673 |
T |
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| Q |
219 |
atagatgaaataaatattgtattgacacacac |
250 |
Q |
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| T |
17737672 |
attgatgaaattaatattgtattaacgcacac |
17737641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 15734413 - 15734182
Alignment:
| Q |
16 |
tgttaatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaa-ttaaaaacccaaaatattctaagat |
114 |
Q |
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|||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||| |
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| T |
15734413 |
tgttgatctgcaaatggcaatctgctcctaacatttttcctaattagggcaaccaatcgactttacatatacaaattaaatacccaaaatattctaagat |
15734314 |
T |
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| Q |
115 |
ctatgcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaagtttaatga |
214 |
Q |
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| T |
15734313 |
ctacatggtcaatgaagaatggcggagtgtaaccaaaaccacaaaaatgctatagctgtatagtgggtagcggtatgaccaccacttcaaagtttaatga |
15734214 |
T |
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| Q |
215 |
aacaatagatgaaataaatattgtattgacac |
246 |
Q |
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| T |
15734213 |
aacaatacatgaaatttatattgtattaacac |
15734182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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