View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_30 (Length: 270)
Name: NF18996_low_30
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 5400533 - 5400600
Alignment:
| Q |
13 |
actcaggtaggagaatggaaaaatttgtttctatttgagctgcatagcagttgaaggtaaatacctta |
80 |
Q |
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| T |
5400533 |
actcaggtaggagaatggaaaaatttgtttctatttgagctgcatagcagttgaaggtaaatatctta |
5400600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 5335227 - 5335281
Alignment:
| Q |
13 |
actcaggtaggagaatggaaaaatttgtttctatttgagctgcatagcagttgaa |
67 |
Q |
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| T |
5335227 |
actcaggtaggagaatggaaaaagttttttctatttgagctgcatagcagttgaa |
5335281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 5375658 - 5375712
Alignment:
| Q |
13 |
actcaggtaggagaatggaaaaatttgtttctatttgagctgcatagcagttgaa |
67 |
Q |
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|||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
5375658 |
actcaggtagaagaatggataaagttgtttctatttgagctacatagcagttgaa |
5375712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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