View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18996_low_31 (Length: 266)
Name: NF18996_low_31
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 26086498 - 26086247
Alignment:
| Q |
1 |
ccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26086498 |
ccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacaatagtttgaacatcacttcctccaattctactatttctag |
26086399 |
T |
|
| Q |
101 |
tacccaaggaaatgttgggaaatctgtcttgtcagaagctattttctgtctgttttcagtttcaaatatgctttccttttatacatcaattacaacaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26086398 |
tacccaaggaaatgttgggaaatctgtcttgtcagaagctattttctgtctgttttcagtttcaaatatgctttccttttatacatcaattacaacaata |
26086299 |
T |
|
| Q |
201 |
attattatgacctcaagtgtgatgcaatgcatggttgtgtacatgctaatgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26086298 |
attattatgacctcaagtgtgatgcaatgcatggttgtgtacatgctaatgt |
26086247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 15329855 - 15329984
Alignment:
| Q |
1 |
ccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctag |
100 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||||||||| || |||||| | |||| ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15329855 |
ccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgctgatgacaataatttgaacatcacttcctccaattctactatttcta- |
15329953 |
T |
|
| Q |
101 |
tacccaaggaaatgttgggaaatctgtcttgtc |
133 |
Q |
| |
|
||| | |||||||||||||||| ||||||| |
|
|
| T |
15329954 |
--ccctaaaaaatgttgggaaatctatcttgtc |
15329984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 15510224 - 15510353
Alignment:
| Q |
1 |
ccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctag |
100 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||||||||| || |||||| | |||| ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15510224 |
ccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgctgatgacaataatttgaacatcacttcctccaattctactatttcta- |
15510322 |
T |
|
| Q |
101 |
tacccaaggaaatgttgggaaatctgtcttgtc |
133 |
Q |
| |
|
||| | |||||||||||||||| ||||||| |
|
|
| T |
15510323 |
--ccctaaaaaatgttgggaaatctatcttgtc |
15510353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 28865957 - 28866078
Alignment:
| Q |
9 |
gaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaag |
108 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||| || |||| | | |||| ||| |||||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
28865957 |
gaatcaactctgagtccccctggtggattttatcagattagttctgatgacaataatttgaacatcacttcctccaattctactatttcta---ccctaa |
28866053 |
T |
|
| Q |
109 |
gaaatgttgggaaatctgtcttgtc |
133 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28866054 |
aaaatgttgggaaatctgtcttgtc |
28866078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14727760 - 14727856
Alignment:
| Q |
1 |
ccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttc |
97 |
Q |
| |
|
||||||| |||||| | ||| |||||||||||||||||||| || |||||| |||||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
14727760 |
ccatgtaccaatcagttttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctccaattctactatttc |
14727856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 29552813 - 29552993
Alignment:
| Q |
23 |
tccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaa |
122 |
Q |
| |
|
|||||||||||||||||||| | || ||| ||||| | | |||||||||| |||||||||||||||||||||| ||||| |||||||| ||| ||| |
|
|
| T |
29552813 |
tccccctggtggagtttatcaggttaatgctagtgacaaaaatttgaacatcacttcctccaattctactatttc---taccctaggaaatgctggaaaa |
29552909 |
T |
|
| Q |
123 |
tctgtcttgtcagaagctattttctgtctgttttcagtttcaaatatgctttccttttatacatcaattacaacaataattatt |
206 |
Q |
| |
|
|| ||| ||||||||| | ||||| || ||||||| ||| ||||| ||||||||| | ||||||| || |||||||||| |
|
|
| T |
29552910 |
tcggtcatgtcagaagttgatttctttcggttttcattttggaatatagtttcctttttgatatcaattgcagtaataattatt |
29552993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28693248 - 28693149
Alignment:
| Q |
1 |
ccatgtatgaatcagctctgactccccctggtggagtttatccga-gtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttcta |
99 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||| || |||||| |||||| || |||||||||| ||||||| || ||||||||||||| |
|
|
| T |
28693248 |
ccatgtttgaatcagctctgacaccccctggtggaatttatcagatttagtgctggtgacagtaatttgaacatcacttcctcaaactctactatttcta |
28693149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 26089299 - 26089364
Alignment:
| Q |
67 |
tgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtcag |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
26089299 |
tgaacatcacttcctccaattctactatttc---tactccaggaaatgctgggaaatctgttttgtcag |
26089364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 24509391 - 24509460
Alignment:
| Q |
65 |
tttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtca |
134 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||| |
|
|
| T |
24509391 |
tttgaacaccacttcctccgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtca |
24509460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 26090238 - 26090318
Alignment:
| Q |
14 |
agctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactat |
94 |
Q |
| |
|
|||| ||||||||| |||||||||||||| || ||| | |||||| ||| || ||||||| |||||| |||||||||||| |
|
|
| T |
26090238 |
agctttgactccccatggtggagtttatcagattagggttggtgacaataattggaacatcacttccttcaattctactat |
26090318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University