View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_32 (Length: 258)
Name: NF18996_low_32
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 32429654 - 32429849
Alignment:
| Q |
1 |
atccacgacgggtgccaaatattgtgaattcaaactcaaatcgcaccaacgacttagatgtgtgggacaaatatcaattgcaaccaataaccaagaaatc |
100 |
Q |
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| T |
32429654 |
atccacgacgagtgccaaatattgtgaattcaaactcaaatcacaccaacgacttagatgtgtgggacaaatatcaattgcaaccaataaccaagaaatc |
32429753 |
T |
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| Q |
101 |
tcaaccaacaacaacaagtctagtaactaaggaaaacaaagatcaaagataagaaagtagaggaatgaatacaatttgtcccagtatgacctatgtt |
197 |
Q |
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| T |
32429754 |
gcaaccaacaacaacaagtctagtaactaaggaaaacaaagatcaaagataagaaagtagaggaatgaatacaatttgt-ccagtatgacctatgtt |
32429849 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 1683808 - 1683768
Alignment:
| Q |
54 |
ttagatgtgtgggacaaatatcaattgcaaccaataaccaa |
94 |
Q |
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| T |
1683808 |
ttagatgtgtgggacaaacatcaatgacaaccaataaccaa |
1683768 |
T |
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