View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_4 (Length: 575)
Name: NF18996_low_4
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 142 - 448
Target Start/End: Original strand, 40491914 - 40492217
Alignment:
| Q |
142 |
cttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaaaatttt-ccattttccatggggtttgtgtttgtatcgtccgc |
240 |
Q |
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| T |
40491914 |
cttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaatttttttccattttccatggggtttgtgtttgtatcgtccgc |
40492013 |
T |
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| Q |
241 |
ttatactaccatcatacctaatgaagaactatttcatcttatttttcacaaggtttttgaatttcaatgggatgaaaattatttaattattcaaaatcaa |
340 |
Q |
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| T |
40492014 |
ttatactaccagcatacctaatgaagaactatttcatcttatttttcacaaggtttttgaatttcaatgggatgaaaattatttaattattcaaaatcaa |
40492113 |
T |
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| Q |
341 |
tatctattatgctattttattttccataaagaaatatatacatccaggtagcacttgtgtgacattatatatagttagtgacattgatcaactacaatgt |
440 |
Q |
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| T |
40492114 |
tatctattatgctattttattttccataaagaaatatatacatccaggtagcacttgtgtgacat----tatagttagtgacattgatcaactacaatgt |
40492209 |
T |
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| Q |
441 |
cacaaatg |
448 |
Q |
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| T |
40492210 |
cacaaatg |
40492217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 143 - 390
Target Start/End: Original strand, 40481359 - 40481609
Alignment:
| Q |
143 |
ttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaaaattttccattttcc---atggggtttgtgtttgtatcgtccg |
239 |
Q |
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| T |
40481359 |
ttgttgttcattatgtagtcgagcttacttttgcagtgatgttttacttgagtgaaaaatttcccatttttcatgatggggtttgtatttgtatcatcca |
40481458 |
T |
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| Q |
240 |
cttatactaccatcatacctaatgaagaactatttcatctt-atttttcacaaggtttttgaatttcaatgg---gatgaaaattatttaattattcaaa |
335 |
Q |
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| T |
40481459 |
cttatattaccagctaacctaatgaataaatgtttcatcttaatttttcacaagttttttcaatttcaatgggatgatgaaaattatgtgattattcaaa |
40481558 |
T |
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| Q |
336 |
atcaatatctattatgctattttattttccataaagaaatatatacatccaggta |
390 |
Q |
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| T |
40481559 |
atcaatatc---tatgctatttca-tttccagaatgaaatatatacattcaggta |
40481609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 488 - 565
Target Start/End: Original strand, 40492257 - 40492334
Alignment:
| Q |
488 |
atccatttattacattgtggttgaccaatgtcaccaccacaaacaatgtcaccaaatattatccagtatttgcctatg |
565 |
Q |
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| T |
40492257 |
atccatttattacattgtggttgaccaatatcaccaccacaaacaatgtcaccaaatattatccagtatttgcctatg |
40492334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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