View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_40 (Length: 211)
Name: NF18996_low_40
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 9594106 - 9594282
Alignment:
| Q |
19 |
attaagtatcctccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacg |
118 |
Q |
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| T |
9594106 |
attaagtatcctccacgagttagttcttaagctatatatcacccaaattgggtctaaagacatatctccatagccatcatgttcacccctaatagttacg |
9594205 |
T |
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| Q |
119 |
taacatatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatcatttatgctaac |
195 |
Q |
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| T |
9594206 |
taacatatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatcatttatgctaac |
9594282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9582316 - 9582489
Alignment:
| Q |
22 |
aagtatcctccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacgtaa |
121 |
Q |
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| T |
9582316 |
aagtatcctccacgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacgtga |
9582415 |
T |
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| Q |
122 |
catatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatcatttatgctaac |
195 |
Q |
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| T |
9582416 |
cagatgaccttatagtcatttctaagattgtcgtagccaaatccatgaagataatacgtatcatgtatgctaac |
9582489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9588011 - 9588184
Alignment:
| Q |
22 |
aagtatcctccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacgtaa |
121 |
Q |
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| T |
9588011 |
aagtatcctccacgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacgtga |
9588110 |
T |
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| Q |
122 |
catatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatcatttatgctaac |
195 |
Q |
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| T |
9588111 |
cagatgaccttatagtcatttctaagattgtcgtagccaaatccatgaagataatacgtatcatgtatgctaac |
9588184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 9602920 - 9603065
Alignment:
| Q |
30 |
tccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacgtaacatatgac |
129 |
Q |
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| T |
9602920 |
tccacgagttagttcttaagctatatttcacccaaattgggtctaaagacatatgtccatagctagcgtgttgacccgtaatagttatgtaacatatgac |
9603019 |
T |
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| Q |
130 |
cttagagtcatttctaagattgtcgtaaccaaatccatgaagataa |
175 |
Q |
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| T |
9603020 |
attataatcatttctaaggtcgtcgtaaccaaatccatgaagataa |
9603065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 9574067 - 9573914
Alignment:
| Q |
22 |
aagtatcctccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacgtaa |
121 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||| ||| |||| ||| |||||||| | |||| ||| ||| |
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| T |
9574067 |
aagtatcctccacgagttagttcttaagctatatatctcccagaatgggtctaaagacatatttccgtagctagcgcgttcacccttgatagatacataa |
9573968 |
T |
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| Q |
122 |
catatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataa |
175 |
Q |
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|| | ||| | | ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9573967 |
caaaagacataatagtcatttctaagattgtcataaccaaatccatgaagataa |
9573914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 9568936 - 9568773
Alignment:
| Q |
22 |
aagtatcctccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacgtaa |
121 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||| | |||||||||| |||||| || || ||||| || |||||| |||||| ||| ||| |
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| T |
9568936 |
aagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatcaccgtaaccagcgtgctcacccataatagatacataa |
9568837 |
T |
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| Q |
122 |
catatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatcat |
185 |
Q |
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| T |
9568836 |
caaatgacattatagtcatttctaagttcatcgtaaccaaatccatgaagataagatgtatcat |
9568773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 54295417 - 54295578
Alignment:
| Q |
22 |
aagtatcctccacgagttagttcttgagctatatatcacccaaattgggtctaaagacatatctccatagccagcatgttcacccctaatagttacgtaa |
121 |
Q |
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|||||||||||| |||||||||||| ||||||||||| |||| | | ||||||||||||| |||| | | |||| | |||| | |||| ||| ||| |
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| T |
54295417 |
aagtatcctccatgagttagttcttaagctatatatctcccagaaggagtctaaagacataactccgtggtcagcgtattcaacatcaatacatacataa |
54295516 |
T |
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| Q |
122 |
catatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatc |
183 |
Q |
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|| |||| |||| |||||||| |||| | ||||||||||||||||||| ||||||| |||| |
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| T |
54295517 |
caaatgagcttatagtcatttataagttcgtcgtaaccaaatccatgattataatatgtatc |
54295578 |
T |
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