View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18996_low_6 (Length: 476)

Name: NF18996_low_6
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18996_low_6
NF18996_low_6
[»] chr5 (4 HSPs)
chr5 (168-460)||(23425278-23425569)
chr5 (4-140)||(23425597-23425733)
chr5 (358-403)||(3548457-3548502)
chr5 (358-401)||(8336981-8337025)
[»] scaffold0002 (3 HSPs)
scaffold0002 (58-140)||(421143-421225)
scaffold0002 (230-293)||(421015-421078)
scaffold0002 (168-229)||(421054-421115)
[»] chr4 (5 HSPs)
chr4 (58-140)||(12089683-12089765)
chr4 (230-293)||(12089555-12089618)
chr4 (168-229)||(12089594-12089655)
chr4 (358-423)||(52788861-52788926)
chr4 (358-401)||(47309572-47309616)
[»] chr3 (7 HSPs)
chr3 (58-140)||(20159195-20159277)
chr3 (175-228)||(20159311-20159364)
chr3 (254-293)||(20159394-20159433)
chr3 (358-424)||(44808930-44808997)
chr3 (358-424)||(32799938-32800004)
chr3 (358-401)||(11045542-11045586)
chr3 (383-419)||(44665071-44665107)
[»] chr7 (3 HSPs)
chr7 (358-424)||(14990637-14990703)
chr7 (358-424)||(15420248-15420314)
chr7 (352-401)||(27727341-27727391)
[»] chr6 (3 HSPs)
chr6 (383-417)||(32924236-32924270)
chr6 (352-400)||(844239-844288)
chr6 (360-400)||(17590132-17590172)
[»] chr8 (2 HSPs)
chr8 (358-411)||(2554741-2554794)
chr8 (362-401)||(23483484-23483524)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 168 - 460
Target Start/End: Complemental strand, 23425569 - 23425278
Alignment:
Q  168 gattggaataatagaaaataggataggaatatattataattaaaggaaatatcatagtctaaaattaaaggaaatatcacaatctaatatatatagaaaa 267  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||    
T  23425569 gattggaataatagaaaataggatatgaatatcttataattaaaggaaatagcacagtctaaaattaaaggaaatatcacagtctaatatatatagaaaa 23425470  T
Q  268 gaatactctttcactttctaactagataaaaagtttttgtcaaaagaagggagttcaaaatttgatttctaagtaaannnnnnngttaatttttatcttg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||    
T  23425469 gaatactctttcactttctaactagataaaaagtttttgtcaaaagaagggagttcaaaatttgatttctaagtaaatttttttgttaa-ttttatcttg 23425371  T
Q  368 aacttttgcaattttaaaaattcatatttaattcatcctatgtttaaaaattataaaatttctaatgaaacattttttaataccctaaacatg 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  23425370 aacttttgcaattttaaaaattcatatttaattcatcctatgtttaaaaattataaattttctaatgaaacattttttaatgctctaaacatg 23425278  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 23425733 - 23425597
Alignment:
Q  4 gagggagacgaaaccaaacatcaatttcaataattttcaagacatgtttaaaaaccactgttcgaatttcatttctatccaatttgaatattagaacagt 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | || ||     
T  23425733 gagggagacgaaaccaaacaacaatttcaataattttcaagacatatttaaaaaccactgttcaaatttcatttctatccaatttgaatatcataatagc 23425634  T
Q  104 ggatatagttatgattcaataggttaggtccacttac 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  23425633 ggatatagttatgattcaataggttaggtccacttac 23425597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 3548502 - 3548457
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaaattcatatttaattcat 403  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||    
T  3548502 ttttatcttgaacttttggcatttaaaaaattcatatttaattcat 3548457  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 8336981 - 8337025
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaa-attcatatttaattc 401  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||    
T  8336981 ttttatctttaacttttgcagttttaaaaaattcatatttaattc 8337025  T

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Target: scaffold0002 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 421225 - 421143
Alignment:
Q  58 ccactgttcgaatttcatttctatccaatttgaatattagaacagtggatatagttatgattcaataggttaggtccacttac 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  421225 ccactgttcgaatttcatttctatccaatttgaatatcagaatagtggatatagttatgattcaataggttaggtccacttac 421143  T

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Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 421078 - 421015
Alignment:
Q  230 aattaaaggaaatatcacaatctaatatatatagaaaagaatactctttcactttctaactaga 293  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  421078 aattaaaggaaatatcacagtctaatatatatagaaaagaatactctttcactttctaactaga 421015  T

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Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 421115 - 421054
Alignment:
Q  168 gattggaataatagaaaataggataggaatatattataattaaaggaaatatcatagtctaa 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  421115 gattggaataatagaaaataggataggaatatcttataattaaaggaaatatcacagtctaa 421054  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 12089765 - 12089683
Alignment:
Q  58 ccactgttcgaatttcatttctatccaatttgaatattagaacagtggatatagttatgattcaataggttaggtccacttac 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  12089765 ccactgttcgaatttcatttctatccaatttgaatatcagaatagtggatatagttatgattcaataggttaggtccacttac 12089683  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 12089618 - 12089555
Alignment:
Q  230 aattaaaggaaatatcacaatctaatatatatagaaaagaatactctttcactttctaactaga 293  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12089618 aattaaaggaaatatcacagtctaatatatatagaaaagaatactctttcactttctaactaga 12089555  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 12089655 - 12089594
Alignment:
Q  168 gattggaataatagaaaataggataggaatatattataattaaaggaaatatcatagtctaa 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  12089655 gattggaataatagaaaataggataggaatatcttataattaaaggaaatatcacagtctaa 12089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 52788926 - 52788861
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaaattcatatttaattcatcctatgtttaaaaattataa 423  Q
    ||||||||||||||||||   ||||||||| | |||||||||||||   ||||| |||||||||||    
T  52788926 ttttatcttgaacttttgacgttttaaaaaattatatttaattcattacatgttaaaaaattataa 52788861  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 47309572 - 47309616
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaa-attcatatttaattc 401  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  47309572 ttttatctttaacttttgccattttaaaaaattcatatttaattc 47309616  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 20159195 - 20159277
Alignment:
Q  58 ccactgttcgaatttcatttctatccaatttgaatattagaacagtggatatagttatgattcaataggttaggtccacttac 140  Q
    |||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  20159195 ccaccgttcgaatttcatttctatccaatttgaatatcaaaatagtggatatagttatgattcaataggttaggtccacttac 20159277  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 20159311 - 20159364
Alignment:
Q  175 ataatagaaaataggataggaatatattataattaaaggaaatatcatagtcta 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  20159311 ataatagaaaataggataggaatatcttataattaaaggaaatatcacagtcta 20159364  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 20159394 - 20159433
Alignment:
Q  254 atatatatagaaaagaatactctttcactttctaactaga 293  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  20159394 atatatatataaaagaatactctttcactttctaactaga 20159433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 44808997 - 44808930
Alignment:
Q  358 ttttatcttgaacttttg-caattttaaaaattcatatttaattcatcctatgtttaaaaattataaa 424  Q
    ||||||||| |||||||| |  |||||||||||||||||||||||||  |||||| ||||||| ||||    
T  44808997 ttttatctttaacttttgtcgtttttaaaaattcatatttaattcattttatgttaaaaaattctaaa 44808930  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 32799938 - 32800004
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaaattcatatttaattcatcctatgtttaaaaattataaa 424  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||| | || || ||||||| ||||    
T  32799938 ttttatcttaaacttttgaaatttcaaaaattcatacttaattcattccatattaaaaaattctaaa 32800004  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 11045542 - 11045586
Alignment:
Q  358 ttttatcttgaacttttgcaatttt-aaaaattcatatttaattc 401  Q
    |||||||||||||||||||  |||| |||||||||||||||||||    
T  11045542 ttttatcttgaacttttgccgttttaaaaaattcatatttaattc 11045586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 44665107 - 44665071
Alignment:
Q  383 aaaaattcatatttaattcatcctatgtttaaaaatt 419  Q
    |||||||||||||||||||||  ||||||||||||||    
T  44665107 aaaaattcatatttaattcattatatgtttaaaaatt 44665071  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 14990703 - 14990637
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaaattcatatttaattcatcctatgtttaaaaattataaa 424  Q
    ||||||||| |||||||||  ||| |||||||||||||||||||||   ||||| ||||||||||||    
T  14990703 ttttatctttaacttttgccttttaaaaaattcatatttaattcatttcatgttaaaaaattataaa 14990637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 15420314 - 15420248
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaaattcatatttaattcatcctatgtttaaaaattataaa 424  Q
    ||||||||| |||||||||  ||| |||||||||||||||||||||   ||||| ||||||||||||    
T  15420314 ttttatctttaacttttgccttttaaaaaattcatatttaattcatttcatgttaaaaaattataaa 15420248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 27727391 - 27727341
Alignment:
Q  352 gttaatttttatcttgaacttttgcaatttt-aaaaattcatatttaattc 401  Q
    ||||| |||||||||||||||||||  |||| |||||||||||||||||||    
T  27727391 gttaaattttatcttgaacttttgccgttttaaaaaattcatatttaattc 27727341  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 32924270 - 32924236
Alignment:
Q  383 aaaaattcatatttaattcatcctatgtttaaaaa 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  32924270 aaaaattcatatttaattcatcttatgtttaaaaa 32924236  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 844239 - 844288
Alignment:
Q  352 gttaatttttatcttgaacttttgcaattttaaaa-attcatatttaatt 400  Q
    |||| |||||||||| ||||||||| ||||||||| ||||||||||||||    
T  844239 gttactttttatctttaacttttgccattttaaaaaattcatatttaatt 844288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 17590132 - 17590172
Alignment:
Q  360 ttatcttgaacttttgcaattttaaaaattcatatttaatt 400  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  17590132 ttatcgtgaacttttgaaattttataaattcatatttaatt 17590172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 2554794 - 2554741
Alignment:
Q  358 ttttatcttgaacttttgcaattttaaaaattcatatttaattcatcctatgtt 411  Q
    ||||||||||||||||||  |||| ||||||||||||||| | ||||| |||||    
T  2554794 ttttatcttgaacttttgatatttaaaaaattcatatttattccatcccatgtt 2554741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 401
Target Start/End: Original strand, 23483484 - 23483524
Alignment:
Q  362 atcttgaacttttgcaatttt-aaaaattcatatttaattc 401  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  23483484 atctttaacttttgcaattttaaaaaattcatatttaattc 23483524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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