View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_high_12 (Length: 388)
Name: NF18997_high_12
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 28471150 - 28471509
Alignment:
| Q |
17 |
catataacaccatttttatatatttctgaaagaaaattcatttcaactttccctgcaatattcatcttaaccataacaaaatcagcattctccacagttt |
116 |
Q |
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| T |
28471150 |
catataacaccatttttatatatttctgaaagaaacttcatttcaactttccctgcaatattcatcttaaccataacaaaatcagcattctccacagttt |
28471249 |
T |
|
| Q |
117 |
ctttaaaccaagcaaccaaatcaaactcttcatcttctttcacatctgcttccccgacattaaccttagcttcatccttaaaattctcatttaattctgg |
216 |
Q |
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| T |
28471250 |
ctttaaaccaagcaaccaaatcaaactcttcatcttctttcacatctgcttccccgacattaaccttagcttcatccttaaaattctcatttaattctgg |
28471349 |
T |
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| Q |
217 |
atgataaacaaatgtaacacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattgga |
316 |
Q |
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| T |
28471350 |
atgataaacaaatgtaacacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattgga |
28471449 |
T |
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| Q |
317 |
taagattgtggaaaccaatcaccaacctcatcttcaacaatattaacataaactaaattc |
376 |
Q |
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| T |
28471450 |
taagattgtggaaaccaatcaccaacctcatcttcaacaatattaacataaactaaattc |
28471509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 40806798 - 40806698
Alignment:
| Q |
218 |
tgataaacaaatgtaacacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggat |
317 |
Q |
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| T |
40806798 |
tgataaacaaacgtgataccaggtcttttcacataagacaacattatagaagtgttgtagtgaacaaaatacacattgaaagctttctgatcaataggat |
40806699 |
T |
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| Q |
318 |
a |
318 |
Q |
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| T |
40806698 |
a |
40806698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 40806931 - 40806875
Alignment:
| Q |
91 |
aacaaaatcagcattctccacagtttctttaaaccaagcaaccaaatcaaactcttc |
147 |
Q |
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| T |
40806931 |
aacaaaatcagcatattgcacagtttctttgaaccaagcaaggaaatcaaactcttc |
40806875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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