View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_high_19 (Length: 287)
Name: NF18997_high_19
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 12403826 - 12404101
Alignment:
| Q |
12 |
atgaagaagaaatggggtggagttattggtcaagctgcttatagggaatggaaatggcatgttgcttcaaataggggtgttgggagtcttaaatatggca |
111 |
Q |
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| T |
12403826 |
atgaagaagaaatggggtggagttattggtcaagctgcttatagggaatggaaatggcatgttgcttcaaatatgggtgttgggagtcttaaacatggca |
12403925 |
T |
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| Q |
112 |
aacaaagtgggttatggatgaaaattttctctcttctttggccttttcaagggatgaaattaaaggttggtgatggaaatgatagctgcaatcataggag |
211 |
Q |
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| T |
12403926 |
aacaaagtgggttatggatgaaaattttctctcttctttggccttttcaagggatgaaattaaaggttggtgatggaaatgatagctgcaatcataggag |
12404025 |
T |
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| Q |
212 |
ttcattgcctgttgattctgttatgaactggtatcttgctatcgaaactggccgcttctggtttcctgctcaagtc |
287 |
Q |
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| T |
12404026 |
ttcattgcctgttgaagctgttatgaactggtatcttgcaattgaaactggccgcttctggtttcctgctcaagtc |
12404101 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 38728945 - 38728887
Alignment:
| Q |
19 |
agaaatggggtggagttattggtcaagctgcttatagggaatggaaatggcatgttgct |
77 |
Q |
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| T |
38728945 |
agaaatggggtagagttattggttctgttgcttatagggaatggaaatggcatgttgct |
38728887 |
T |
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