View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_11 (Length: 487)
Name: NF18997_low_11
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_11 |
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| [»] scaffold0758 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 38000534 - 38000092
Alignment:
| Q |
11 |
cacagaggcatccaatacaaatatcatggaatgatggagtgaatggcgaggagcatggtaattgaatgagatttagttaatcaatgattgtcttgactct |
110 |
Q |
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| T |
38000534 |
cacaaaggcaaccaatacaaatatcatggaatgatggagtgaatggcgaggagcatggtaattgaatgagatttagttaatcaatgattgtcttgactct |
38000435 |
T |
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| Q |
111 |
tgaggcatggtgagagagaaggaaaatttggtcgattgaagaaaatgtgtcttaattgagagaagggaaattgtggaagaaaattgtataagcaagagaa |
210 |
Q |
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| T |
38000434 |
tgaggcatggtgagagagaaggaaaatttggtagattgaagaaaatgtgtcttaattgagagaagggaaattgtggaagaaaattgtatgagcaagagaa |
38000335 |
T |
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| Q |
211 |
gacagaaaatatatcatggtctgttattgaatgaacacggttttctcttatttttatgcaaagcaatttgctacattgtgcaactaatatttttgttctc |
310 |
Q |
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| T |
38000334 |
gacagaaaatatatcatggtctgttattgaatgaacacggttttctcttatttttatgcaaagcaatttgctacattgtgcaactaatatttttgttctc |
38000235 |
T |
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| Q |
311 |
ctttcttccccctgtattgaatgaacacggttttctcctatttttgtgcaaatgggttttctcctatttctcacacaagtaaagcaactaagccaagtta |
410 |
Q |
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| T |
38000234 |
ctttcttccccctgtattgaatgaacacggttttctcctatttttgtgcaaatgggttttctcctatttctcacacaagtaaagccactaagccaagtta |
38000135 |
T |
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| Q |
411 |
ttaggagtaatctgtaacgtatttgactgagcaattgggtacc |
453 |
Q |
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| T |
38000134 |
ttaggagtaatctgtaacgtatttgactgagcaattgggtacc |
38000092 |
T |
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Target: scaffold0758 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 290 - 342
Alignment:
| Q |
400 |
aagccaagttattaggagtaatctgtaacgtatttgactgagcaattgggtac |
452 |
Q |
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| T |
290 |
aagccaagttattaggagtaatctgtaacctatttgactgagcaattgggtac |
342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 13164723 - 13164771
Alignment:
| Q |
404 |
caagttattaggagtaatctgtaacgtatttgactgagcaattgggtac |
452 |
Q |
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| T |
13164723 |
caagtaattaggagtaatatgcaacctacttgactgagcaattgggtac |
13164771 |
T |
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