View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_13 (Length: 371)
Name: NF18997_low_13
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 31010190 - 31009848
Alignment:
| Q |
19 |
acttaccaccaaaaccaacaaccacctaagccacaaacaatacttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaagga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010190 |
acttaccaccaaaaccaacaaccacctaagccacaaacaatacttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaagga |
31010091 |
T |
|
| Q |
119 |
aaggtgaaaaagagattgacacaaagacctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010090 |
aaggtgaaaaagagattgacacaaagacctaattgtaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaa |
31009991 |
T |
|
| Q |
219 |
aagcaaagtaacctaaagtagcaaaacctccatacaacagaaaaattagaaacattcccaaacccaaaactccaccaaatttatctttatcttttgcttc |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009990 |
aagcaaagtaacctaaagtagcaaaacctccatacaatagaaaaattaggaacattcccaaacccaaaactccaccaaatttatctttatcttttgcttc |
31009891 |
T |
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| Q |
319 |
tgattccaaaggcaaaaccattcctattccttcaaaagaataa |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009890 |
tgattccaaaggcaaaaccattcctattccttcaaaagaataa |
31009848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 9782495 - 9782707
Alignment:
| Q |
23 |
accaccaaaaccaacaaccacctaagccacaaacaatacttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaagg |
122 |
Q |
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||||||||||||||||||||||| | ||| ||||||||| |||| | |||||| |||||||||| || ||||||||||||||||||||||||||||| | |
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| T |
9782495 |
accaccaaaaccaacaaccacctcacccataaacaatacctagaatcacaaaaccttctctcaaaaacctcataaacaggattcatcatcaaaggaaatg |
9782594 |
T |
|
| Q |
123 |
tgaaaaagagattgacacaaagacctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagc |
222 |
Q |
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| | ||| | ||| | ||| || ||||||||||||| | || |||| ||||| |||| ||| |||||||||| | | |||| ||||||||||||| |
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| T |
9782595 |
taataaacaaattaatacatagccctaattgaaccataacacctatcacaccttgacctaaattattagtaataatatccttagtttcttcaccaaaagc |
9782694 |
T |
|
| Q |
223 |
aaagtaacctaaa |
235 |
Q |
| |
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||| ||||||||| |
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| T |
9782695 |
aaaataacctaaa |
9782707 |
T |
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Back To:
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