View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_14 (Length: 360)
Name: NF18997_low_14
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 29180391 - 29180051
Alignment:
| Q |
20 |
agctataaggtgctcctccaaatgtacttgcattgttattgttggctagaggtaattttggttctatattggttgttatatggttgtagattgggttggt |
119 |
Q |
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| T |
29180391 |
agctataaggtgctcctccaaatgtacttgcattgttattgttggctagaggtaattttggttccatattggttgttatattgttgtagattgggttggt |
29180292 |
T |
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| Q |
120 |
ttggttttgagaaaacatggagaagcagggcacttgctcatattcatctgtatggaattgagcttggtcaaaacttatgtaagaatccattaatgctgga |
219 |
Q |
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| T |
29180291 |
ttggttttgagaaaacatggagaagcagggcacttgctcatattcatctgtatggaattgagcttggtcaaaacttatgtaagaatccattaatgctgga |
29180192 |
T |
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| Q |
220 |
agtgatgaagagcctgtgtcatcatagcaactacccatgcttggaggttttgtagcaacttctctgtttttgtagaacactctacacaaaacccaatctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29180191 |
agtgatgaagagcctgtgtcatcatagcaactacccatgcttggaggttttgtagcaacttctctgtttttgtagaacaccctacacaaaacccaatctt |
29180092 |
T |
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| Q |
320 |
cctgtatatacacaagattatgcaaattattattactctat |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29180091 |
cctgtatatacacaagattatgcaaattattattactctat |
29180051 |
T |
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