View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_15 (Length: 346)
Name: NF18997_low_15
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 48 - 330
Target Start/End: Complemental strand, 9574900 - 9574618
Alignment:
| Q |
48 |
cccgtccagttatttttctttctcaaaataaatatgcagaggaagttattgagcacacatgtatgtctgctggcaagtcatcacccacacatgtgaatac |
147 |
Q |
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| T |
9574900 |
cccgtccagttatttttctttctcaaaataaatatgcagaggaagttattgagcacacatgtatgtctactggcaagtcatcacccatacatgtgaatac |
9574801 |
T |
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| Q |
148 |
aaaggcaaaactcagtggttcttcaagaaactcctatgaagatccaacataatatcataacctcgcttgatctttgcaatacctgacatttacaagatca |
247 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | ||| | ||||||||||||||||||||| |
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| T |
9574800 |
aaaggcaaaactcagtggttcttcatgaaacccctatgaagatccaacataatatcatagcctcgcttgagcattgtagtacctgacatttacaagatca |
9574701 |
T |
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| Q |
248 |
aatatctcttctgaagttcaagaagtgtgcttgtttatacataacccaaaaacacaacacatgtctttttgaaaagtattatt |
330 |
Q |
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| T |
9574700 |
aatatctcttatgaagttcaagaagtgtgcttgtttatacataccccaaaaacacaacacatgtctttatgaaaagtattatt |
9574618 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 25745339 - 25745419
Alignment:
| Q |
233 |
acatttacaagatcaaatatctcttctgaagttcaagaagtgtgcttgtttatacataacccaaaaacacaacacatgtct |
313 |
Q |
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|||||||||||| || ||||||||| || ||||||| | || ||||||||||| ||| | ||||||||| |||| |||||| |
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| T |
25745339 |
acatttacaagaccagatatctcttatgtagttcaacatgtatgcttgtttatgcatgatccaaaaacataacatatgtct |
25745419 |
T |
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