View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_17 (Length: 330)
Name: NF18997_low_17
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 45 - 322
Target Start/End: Original strand, 31636336 - 31636616
Alignment:
| Q |
45 |
ctctgttttttccccagaatggatacttgaggtttgtgacactgtc---tccgcagtcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgt |
141 |
Q |
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| T |
31636336 |
ctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgt |
31636435 |
T |
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| Q |
142 |
ttgaatattgatgatgaagatcatcaaaagtatcacggagnnnnnnngaaaagaagatggatgaagaagaggtttcattcttgaagccgaaggaagaaag |
241 |
Q |
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| T |
31636436 |
tggaatattgatgatgaagatcatcaaaagcatcacggagaaaaagagaaaagaagatggatgaagaagaggtttcattcttgcagccgaagaaagaaag |
31636535 |
T |
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| Q |
242 |
ttagaataggtttagttggaaagaggaatagca-aaaaagggatataaaaatcaaagactgaaataaac-aaactacgcgtag |
322 |
Q |
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| T |
31636536 |
ttagaataggtttagttggaaagaggaatagcactaaaagggatat--aaatcaatgtctgaaataaacaaaactacgcgtag |
31636616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 31621341 - 31621469
Alignment:
| Q |
45 |
ctctgttttttccccagaatggatacttgaggtttgtgacactgtc---tccgcagtcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgt |
141 |
Q |
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| T |
31621341 |
ctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgt |
31621440 |
T |
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| Q |
142 |
ttgaatattgatgatgaagatcatcaaaa |
170 |
Q |
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| T |
31621441 |
tggaatattgatgatgaagatcatcaaaa |
31621469 |
T |
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