View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_19 (Length: 306)
Name: NF18997_low_19
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 26563925 - 26563644
Alignment:
| Q |
10 |
ataatacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaac |
109 |
Q |
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| T |
26563925 |
ataatacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaac |
26563826 |
T |
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| Q |
110 |
tgcagtctgaaaaaccgcaataatgtgaggtaaacaaaatattctacgaaaacaaccaaagaaaagtttttacattttgtaaatgtagaagattgatctc |
209 |
Q |
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| T |
26563825 |
tgcagtctgaaaaaccgaaataatgtgaggtaaacaaaatattctacgaaaacaaccacagaaaagtttttacattttgtaaatgtagaagattgatctc |
26563726 |
T |
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| Q |
210 |
ttccttaacatactc-tttacgaagttatctatttataaggctacaaaattgactttcagaaaaataaacaaacaacgaaaa |
290 |
Q |
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||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26563725 |
ttccttaacatactcttttacgaagttatatacttataaggctacaaaattgactttcagaaaaataaacaaacaacgaaaa |
26563644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 26558433 - 26558322
Alignment:
| Q |
14 |
tacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgca |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
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| T |
26558433 |
tacttcggtagcagcttcaagatttttgtccacaattaaagacttcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgca |
26558334 |
T |
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| Q |
114 |
gtctgaaaaacc |
125 |
Q |
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| T |
26558333 |
gtctgcaaaacc |
26558322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 26551787 - 26551682
Alignment:
| Q |
14 |
tacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgca |
113 |
Q |
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||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||| | ||||||||||||| |||||| ||||||||| |
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| T |
26551787 |
tacttcggtggcagcttcaaggtttctgtccacaactagcgacttcctaatgatttctgcatcacgtgcggcagggtcaggcaaccaaagtagaactgca |
26551688 |
T |
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| Q |
114 |
gtctga |
119 |
Q |
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|||||| |
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| T |
26551687 |
gtctga |
26551682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 50935895 - 50936005
Alignment:
| Q |
14 |
tacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgca |
113 |
Q |
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||||||||||||||||||||||||| | ||||||| ||| |||||||| |||||||| | |||||||||||| |||||||||||||||| ||||| ||| |
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| T |
50935895 |
tacttcggtagcagcttcaaggtttctatccacaactagtgacttcctgatgatttccacatcacgtcctgcatggtcaggcatccaaagtagaacagca |
50935994 |
T |
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| Q |
114 |
gtctgaaaaac |
124 |
Q |
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||||||||||| |
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| T |
50935995 |
gtctgaaaaac |
50936005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 50936189 - 50936279
Alignment:
| Q |
200 |
gattgatctcttccttaacatactctttacgaagttatctatttataaggctacaaaattgactttcagaaaaataaacaaacaacgaaaa |
290 |
Q |
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||||||||||||| |||||| || |||||| |||||||||| ||||| | ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
50936189 |
gattgatctcttctttaacacacactttacaaagttatctacttatatgactacagaattgactttcagaaaaataaacaaacaatgaaaa |
50936279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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