View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18997_low_23 (Length: 251)
Name: NF18997_low_23
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_23 |
 | |
|
| [»] scaffold0442 (1 HSPs) |
| | |
|
| [»] scaffold0167 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9289623 - 9289388
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
9289623 |
aaaatagattgaaattgagagtgaaacatacagtcaaaattctgcagagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaaccttga |
9289524 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9289523 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactgctcaattctaagtgggattgatttatgaatagcaacaatggcatt |
9289424 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9289423 |
ttagtttacggtaaaatgggaagtaaaataggttac |
9289388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8211383 - 8211148
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |
|
|
| T |
8211383 |
aaaatagattgaaattgagagtgaaacatacagtcaaaattctgcagagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaacctcga |
8211284 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8211283 |
tgctccttcaattgtttgtctctcttgggaaaaattatggaaccacataaaactgctcaattctaagtgggattgatttattaatagcaacaatgacatt |
8211184 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8211183 |
ttagtttacggtaaaatgggaagtaaaataggttac |
8211148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7055564 - 7055799
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
7055564 |
aaaatagattgaaattgagagtgaaacatacactcaaaattctgcagagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaacctcta |
7055663 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
7055664 |
ttctccttcaattgtttgtctctcttaggaaaaattgtggaaccgcataaaactgctcaattctaagtgggtttgatttattaatagcaacaatggcatt |
7055763 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7055764 |
ttagtttacggtaaaatgggaagtaaaataggttac |
7055799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14463385 - 14463620
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| || | |
|
|
| T |
14463385 |
aaaatagattgaaattgagagtgaaacatacactcaaaattctgcatagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaatctcta |
14463484 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
14463485 |
ttctccttcaattgtttgtctctcttaggaaaaattgtggaaccgcataaaactgctcaattctaagtgggtttgatttattaatagcaacaatggcatt |
14463584 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14463585 |
ttagtttacggtaaaatgggaagtaaaataggttac |
14463620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51423810 - 51423576
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||| |||||||||||||||| || |
|
|
| T |
51423810 |
aaaataaattgaaattgagagtgaaacatacagtcaaaattctacagagtttaattaatagaaaaaa-ttcaaacaaattataaaaacttctaacctgga |
51423712 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51423711 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactgctcaattctaagtgggattgatttattaatagcaacaataacatt |
51423612 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
51423611 |
ttagtttatagtaaaatgggaagtaaaataggttac |
51423576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11685411 - 11685194
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| || |
|
|
| T |
11685411 |
aaaatagattgaaattgagagtgaaacatagagtcaaaattctgcagagtctaattaatggaaaaaaattcaaacaaattataaaaacttctaacctcga |
11685312 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11685311 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcat------------------gtgggattgatttattaatagcaacaatggcatt |
11685230 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11685229 |
ttagtttacggtaaaatgggaagtaaaataggttac |
11685194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 32060277 - 32060229
Alignment:
| Q |
188 |
caacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32060277 |
caacaatgacattttagtttacgataaaatgggaagtaaaataggttac |
32060229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 12840780 - 12840830
Alignment:
| Q |
186 |
agcaacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12840780 |
agcaacaatggcattttagcttacggtaaaatgggaagtaaaataggttac |
12840830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38979567 - 38979329
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnt---tcaaacaaattgtaaaaacttctaacct |
97 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38979567 |
aaaatagattgaaattgaaagtgaaacatacactcaaaattctgcagagtttaattaatgaaaaaaaaaatatcaaacaaattataaaaacttctaacct |
38979468 |
T |
|
| Q |
98 |
tgatgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgac |
197 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
38979467 |
ctattctccttcaattgtttgtctctcttaggaaaaactgtggaaccgcataaaactgctcaattctaagtgggtttgatttattaatagcaacaatggc |
38979368 |
T |
|
| Q |
198 |
attttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38979367 |
attttagtttacggtaaaatgggaagtaaaataggttac |
38979329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13354 - 13588
Alignment:
| Q |
1 |
aaaatagattgaaattgagagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||| | |
|
|
| T |
13354 |
aaaatagattgaaattgagagtgaaacatacagtcaaaattctgcagagtttaattaatggaaaaaa-ttaaaacaaattataaaaactcctaacctcta |
13452 |
T |
|
| Q |
101 |
tgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacatt |
200 |
Q |
| |
|
| |||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
13453 |
ttctccttgaattgtttgtctctcttaggaaaaattgtggaactgcataaaactgctcaattctaattgggtttgatttattaatagcaacaatggcatt |
13552 |
T |
|
| Q |
201 |
ttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13553 |
ttagtttacggtaaaatgggaagtaaaatatgttac |
13588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 20221 - 20373
Alignment:
| Q |
82 |
taaaaacttctaaccttgatgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttat |
181 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
20221 |
taaaaacttctaacctctattctcattcaattgtttgtctct--taggaaaaattgtggaaccgcataaaactgctcaattctaagtggatttgatttat |
20318 |
T |
|
| Q |
182 |
taatagcaacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20319 |
taatagcaacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
20373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University