View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18997_low_24 (Length: 244)

Name: NF18997_low_24
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18997_low_24
NF18997_low_24
[»] chr3 (5 HSPs)
chr3 (13-105)||(21733160-21733252)
chr3 (13-105)||(21741661-21741753)
chr3 (157-231)||(21741534-21741608)
chr3 (157-231)||(21733033-21733107)
chr3 (15-95)||(21748683-21748763)
[»] chr1 (1 HSPs)
chr1 (35-102)||(30148053-30148120)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 21733252 - 21733160
Alignment:
Q  13 atgcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaatgatcaaaagagaaagcttcattataaactcg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21733252 atgcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaactcg 21733160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 21741753 - 21741661
Alignment:
Q  13 atgcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaatgatcaaaagagaaagcttcattataaactcg 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21741753 atgcaatagaagagaagaaactcactgctagaagagctaatgaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaactcg 21741661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 21741608 - 21741534
Alignment:
Q  157 atctccctcactatttataagcaagtaatagtatagcactataatacaatttatcatcacattctagttacaaac 231  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21741608 atctccctcactatttataagcaagtaatagtatagcagtataatacaatttatcatcacattctagttacaaac 21741534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 21733107 - 21733033
Alignment:
Q  157 atctccctcactatttataagcaagtaatagtatagcactataatacaatttatcatcacattctagttacaaac 231  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21733107 atctccctcactatttataagcaagtaatagtatagcagtataacacaatttatcatcacattctagttacaaac 21733033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 21748763 - 21748683
Alignment:
Q  15 gcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaatgatcaaaagagaaagcttcat 95  Q
    |||||||||||||||| |||||||||  || |||||||  |||||||||| ||||||||||||||||||||| ||||||||    
T  21748763 gcaatagaagagaagatactcactgcacgatgagctaaccaggagagacacaaagaaaatgatcaaaagagatagcttcat 21748683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 30148053 - 30148120
Alignment:
Q  35 cactgctagaagagctaattaggagagacaaaaagaaaatgatcaaaagagaaagcttcattataaac 102  Q
    ||||||| || |||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||    
T  30148053 cactgcttgatgagctaattaggggagacacagagaaaatgatcaaaatagaaagcttcattataaac 30148120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University