View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18997_low_25 (Length: 239)
Name: NF18997_low_25
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_25 |
 | |
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| [»] scaffold0442 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 51423871 - 51424089
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51423871 |
ttgatggcggattgtacaagaacaaccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
51423970 |
T |
|
| Q |
101 |
tattttatagtannnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgnnnnnnnggttaatcctctaggtgca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
51423971 |
tattttatagtgttttttttccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgtttttttggttaatcctctaggtgca |
51424070 |
T |
|
| Q |
201 |
acagttagagtatgtatct |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
51424071 |
acagttagagtatgtatct |
51424089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11685472 - 11685581
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||| |
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|
| T |
11685472 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacgcatatattgtagaagtggctttatggatgttt |
11685571 |
T |
|
| Q |
101 |
tattttatag |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
11685572 |
tattttatag |
11685581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 11685962 - 11686058
Alignment:
| Q |
121 |
ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgnnnnnnnggttaatcctctaggtgcaacagttagagtatgtat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
11685962 |
ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgtttttttggttaatcctctaggtgcaagagttagagtatgtat |
11686058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 9289684 - 9289902
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9289684 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
9289783 |
T |
|
| Q |
101 |
tattttatagtannnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgnnnnnnnggttaatcctctaggtgca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
9289784 |
tattttatagtgattttttttcttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatatgtttttttggttaatcctctaggtgca |
9289883 |
T |
|
| Q |
201 |
acagttagagtatgtatct |
219 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
9289884 |
acagttagagtttgtatct |
9289902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8211444 - 8211658
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8211444 |
ttgatggcggattgtacaagaacaaccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcgtaga----- |
8211538 |
T |
|
| Q |
101 |
tattttatagt-annnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgnnnnnnnggttaatcctctaggtgc |
199 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8211539 |
tattgtatagtgtttttttttccttatatgcatttgaattcctcgacaacgaattacattaccatcatgaatgtgtttttttggttaatcctctaggtgc |
8211638 |
T |
|
| Q |
200 |
aacagttagagtatgtatct |
219 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8211639 |
aacagttagagtatgtatct |
8211658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 13293 - 13073
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13293 |
ttgatggtggattgtacaagaacatccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttg |
13194 |
T |
|
| Q |
101 |
tattttata--gtannnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgnnnnnnnggttaatcctctaggtg |
198 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
13193 |
tattttatagtgttttttttttccttatatgcatttgaattcctcggaaacgaattacattaccatcacgaatgtgttatttttgttaatcatctaggtg |
13094 |
T |
|
| Q |
199 |
caacagttagagtatgtatct |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13093 |
caacagttagagtatgtatct |
13073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 7055505 - 7055285
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7055505 |
ttgatggcggattgtacaagaacaaccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaactggcttcatagatgttg |
7055406 |
T |
|
| Q |
101 |
tattttatagt-annnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-nnnnnnnggttaatcctctaggtg |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
7055405 |
tattttatagtgtttttttttccttatatgcatttgaattcctcgggaacgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtg |
7055306 |
T |
|
| Q |
199 |
caacagttagagtatgtatct |
219 |
Q |
| |
|
|| ||||||| |||||||||| |
|
|
| T |
7055305 |
cagcagttagcgtatgtatct |
7055285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14463324 - 14463152
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagccaaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14463324 |
ttgatggcggattgtacaagaacagccaaaaggatacaattacttaaaaactaagactaccgtggacacatatatagtagaagtggcttcatagatgttg |
14463225 |
T |
|
| Q |
101 |
tattttatagtannnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg |
174 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
14463224 |
tattttatagt-gtttttttccttatattcatttgaattcctcgggaacgaattacattaccatcacgaatgtg |
14463152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 38979628 - 38979846
Alignment:
| Q |
1 |
ttgatggcggattgtacaagaacagcc-aaaaggatgcaattacttaagaactaagactaccgtggacacatatatagtagaagtggcttcatagatgtt |
99 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38979628 |
ttgatgtcggattgtacaagaacagcccaaaaggatgcaattacttaagtactaagactaccgtggacacatatatagtagaagtagcttcatagatgtt |
38979727 |
T |
|
| Q |
100 |
ttattttatagtannnnnnnnccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-nnnnnnnggttaatcctctaggtg |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
38979728 |
gtattttatagt--gttttttccttatatgcatttgaattcctcgagaatgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtg |
38979825 |
T |
|
| Q |
199 |
caacagttagagtatgtatct |
219 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
38979826 |
cgacagttagagtatgtatct |
38979846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 24998892 - 24998984
Alignment:
| Q |
121 |
ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtgnnnnnnnggttaatcctctaggtgcaacagttagagtat |
213 |
Q |
| |
|
||||||||||||||||| |||| | ||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
24998892 |
ccttatatgcatttgaactccttaggaacaaattatattaccatcatgaatgtgcttttttggttaatcctctatgtgcaacagttagagtat |
24998984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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