View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_26 (Length: 238)
Name: NF18997_low_26
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12404242 - 12404476
Alignment:
| Q |
1 |
taacaaggtgtcacagttagcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12404242 |
taacaaggtgtcacagttagtatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgt |
12404341 |
T |
|
| Q |
101 |
gtcaaaatgatacaacattttc----------aatgaatagtgttttctcacatgttacaattttggtgttggtgttgtagaatggtcatcttggtttcc |
190 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12404342 |
gtcaaaatgatacaacattttcaatggaatttaatgaatagtgttttctcacatgttacaattttggtgttggtgttgtagaatggtcatcttggtttcc |
12404441 |
T |
|
| Q |
191 |
tgttatcttgctatgatgctgaacttagctatgat |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
12404442 |
tgttatcttgctatgatgctgaacttagctatgat |
12404476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 3041606 - 3041691
Alignment:
| Q |
21 |
catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaa |
106 |
Q |
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||||||||||| ||||| ||||||||| ||||| || ||||||||| || ||||| || | |||| |||| ||||||||||||| |
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| T |
3041606 |
catccactaaatgtaattaaccacatatgtgaacggtgttaaccatccaagttgttgtcgatttttgttttcaaatttgtgtcaaa |
3041691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 42467885 - 42467942
Alignment:
| Q |
19 |
agcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt |
76 |
Q |
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|
| T |
42467885 |
agcatccactaaacataattaaccacatatttgaactgcattaaccatctgaattgtt |
42467942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 37494778 - 37494733
Alignment:
| Q |
42 |
cacatatttgaactgtattaaccatctaaattgttatcaaaatttg |
87 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||||| |
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|
| T |
37494778 |
cacatatttgaactgcattaaccatccaaattgttatcgaaatttg |
37494733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 19808806 - 19808751
Alignment:
| Q |
21 |
catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt |
76 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || ||||||||| |||||||| |
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|
| T |
19808806 |
catccactaaacgtaatttaccacatatttgaacggtgttaaccatccaaattgtt |
19808751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 1327663 - 1327620
Alignment:
| Q |
44 |
catatttgaactgtattaaccatctaaattgttatcaaaatttg |
87 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
1327663 |
catagttgaactgtgttaaccatctaatttgttatcaaaatttg |
1327620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 4364306 - 4364244
Alignment:
| Q |
25 |
cactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg |
87 |
Q |
| |
|
|||| ||||||||| || ||||||||||| || ||||| |||||||||||| |||||||||| |
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|
| T |
4364306 |
cactgaacataattaactacatatttgaattgcgttaactatctaaattgttgtcaaaatttg |
4364244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 4483990 - 4483922
Alignment:
| Q |
21 |
catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgat |
89 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||| |||||||| | ||||||| |||||||||||| |
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|
| T |
4483990 |
catccactgaacataattagccacacatttgaactgtgttaaccatgtcaattgttgtcaaaatttgat |
4483922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 32817250 - 32817217
Alignment:
| Q |
59 |
ttaaccatctaaattgttatcaaaatttgatttc |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
32817250 |
ttaaccatctaaattgttatcaaaatttgatttc |
32817217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 32409870 - 32409924
Alignment:
| Q |
21 |
catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgt |
75 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||||||||| |||| |
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|
| T |
32409870 |
catccactaaacataagcaagcacatatttgaattgtattaaccatctaatttgt |
32409924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 5078989 - 5078927
Alignment:
| Q |
21 |
catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaa |
83 |
Q |
| |
|
|||| |||||| ||||| |||| |||||||||||| |||||||||| |||||||| |||||| |
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|
| T |
5078989 |
catctactaaatgtaattaaccatatatttgaactgcattaaccatccaaattgttgtcaaaa |
5078927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 6986768 - 6986830
Alignment:
| Q |
46 |
tatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaat |
108 |
Q |
| |
|
||||||||||| |||||||||||||||| || || ||||||| | || ||||| ||||||||| |
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|
| T |
6986768 |
tatttgaactgcattaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaat |
6986830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 7712351 - 7712404
Alignment:
| Q |
34 |
taatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg |
87 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||| |||| || ||||||| |
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|
| T |
7712351 |
taattaaccacatatttgaactatgttaaccatctaaactgttgtcgaaatttg |
7712404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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