View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18997_low_27 (Length: 238)

Name: NF18997_low_27
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18997_low_27
NF18997_low_27
[»] chr4 (1 HSPs)
chr4 (1-223)||(48908586-48908808)
[»] chr8 (9 HSPs)
chr8 (109-203)||(2028466-2028560)
chr8 (113-203)||(10767641-10767731)
chr8 (111-203)||(1950435-1950527)
chr8 (109-193)||(2050253-2050337)
chr8 (129-193)||(2057216-2057280)
chr8 (109-203)||(2033002-2033099)
chr8 (114-201)||(2046436-2046526)
chr8 (109-199)||(2054253-2054346)
chr8 (114-201)||(2037059-2037149)
[»] chr2 (2 HSPs)
chr2 (115-198)||(28786114-28786197)
chr2 (10-51)||(5320386-5320427)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48908586 - 48908808
Alignment:
Q  1 ttattaaatttaaaaataatataacatactatattttctttgattattattattgttgttgttaattttttagtacaaagatgaagaatcacataaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48908586 ttattaaatttaaaaataatataacatactatattttctttgattattattattattgttgttaattttttagtacaaagatgaagaatcacataaatat 48908685  T
Q  101 taaatgcaaaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48908686 tatatgcaaaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggt 48908785  T
Q  201 gagttagacaacccaccaatatt 223  Q
    |||||||||||||||||||||||    
T  48908786 gagttagacaacccaccaatatt 48908808  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 2028560 - 2028466
Alignment:
Q  109 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 203  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||    
T  2028560 aaacatacctgcatacaacaggaaaatcttctggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgag 2028466  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 10767731 - 10767641
Alignment:
Q  113 atacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 203  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgag 10767641  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 1950435 - 1950527
Alignment:
Q  111 acatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 203  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||  | ||||||||||||||||||| |||||||||    
T  1950435 acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgag 1950527  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 2050337 - 2050253
Alignment:
Q  109 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgag 193  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||||||||||| ||||   |||| ||||||||||||||||    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgag 2050253  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 2057280 - 2057216
Alignment:
Q  129 ggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgag 193  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  2057280 ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgag 2057216  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 2033099 - 2033002
Alignment:
Q  109 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctggtgag 203  Q
    |||||||||||||||| | |||||| |||| ||||||| ||||||||||   ||||||| |||| |||||| |||||||||||||||| |||||||||    
T  2033099 aaacatacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgag 2033002  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 2046526 - 2046436
Alignment:
Q  114 tacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctggtg 201  Q
    ||||||||||| | |||||  |||||||||||| ||||||||||   ||||||| |||||  ||||||||| ||||||||||| |||||||    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtg 2046436  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 2054346 - 2054253
Alignment:
Q  109 aaacatacctgcatactagaggaaaatcttctggtttgggagtatca---ggagccaagaaacaaataaaagtatccctccaattgagcgctgg 199  Q
    |||||||||||||||| | |||||| |||||||||||| ||||||||   |||||||||  ||||  |||| ||||| |||||||||| |||||    
T  2054346 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctgg 2054253  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 2037149 - 2037059
Alignment:
Q  114 tacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctggtg 201  Q
    ||||||||||| | |||||  |||||||||||  ||||||||||   ||||||| |||||  ||||||||| ||||||||||| |||||||    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtg 2037059  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 28786114 - 28786197
Alignment:
Q  115 acctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctg 198  Q
    ||||||||||||| || || |||| |||||| |||| || |||||||||| |||| | ||||||||||||||||||||| ||||    
T  28786114 acctgcatactagtggcaagtcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctg 28786197  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 5320386 - 5320427
Alignment:
Q  10 ttaaaaataatataacatactatattttctttgattattatt 51  Q
    |||||||||||||||||||  ||||||||||| |||||||||    
T  5320386 ttaaaaataatataacataaaatattttcttttattattatt 5320427  T

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