View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18997_low_28 (Length: 234)
Name: NF18997_low_28
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_28 |
 |  |
|
| [»] scaffold0067 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8695344 - 8695560
Alignment:
| Q |
1 |
atgatagagatggactagaatacttatcatagattagatnnnnnnnctcgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8695344 |
atgatagagatggactagaatacttatcatagattaggtaaaaaa-ctcgaaggcctgtactattttcaaaaaatgaattcgggacttcgattttcaaat |
8695442 |
T |
 |
| Q |
101 |
tgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695443 |
cgtggcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataa |
8695542 |
T |
 |
| Q |
201 |
caaatatttaatatttgt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8695543 |
caaatatttaatatttgt |
8695560 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 28177486 - 28177266
Alignment:
| Q |
1 |
atgatagagatggactagaatacttatcatagattagatnnnnnnnctcgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaat |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
28177486 |
atgatagagatagactagaatacttatcatagattagataaaaaa-ctcgaaggcccgtactattttcaaaaaatgaattcgggacatcgattttcaaat |
28177388 |
T |
 |
| Q |
101 |
tgtgtcagtt------ttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaagcataaaggaaaacacatccttaagcttgccttc |
194 |
Q |
| |
|
||| |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
28177387 |
cgtggcagtggaagccttccttcttatgcccagtgacaattagaatctcaagcttggaaccatcaagcatacatgaaaacacatcctcaagcttgccttc |
28177288 |
T |
 |
| Q |
195 |
acataacaaatatttaatattt |
216 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28177287 |
acataacaaatatttaatattt |
28177266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 28078812 - 28078641
Alignment:
| Q |
47 |
ctcgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaag |
146 |
Q |
| |
|
|||||||| | ||| |||||||||||||||| || ||||||| | |||||| |||||| || | ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28078812 |
ctcgaaggcccgtagtattttcaaaaaatgagttcgggacttcggttttcacattgtgccaatcttcatccttatgctcaatgacaattagaatctcaag |
28078713 |
T |
 |
| Q |
147 |
cttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttgt |
218 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28078712 |
cttggaaccatcaagcttagaggaaaacacatccttaagcttgccttgacataacaaatatttaatatttgt |
28078641 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 28514061 - 28514216
Alignment:
| Q |
62 |
tattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaag |
161 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||| |||||| || | |||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28514061 |
tattttcaaaaaatgagttcaggacttcgattttcagattgtgacaatcttcatccttaagcacagtgacaattagaatctcaagcttggaaccatcaag |
28514160 |
T |
 |
| Q |
162 |
cataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttg |
217 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
28514161 |
cttaaaggaaaacacatccttaagctttccttcacatagcaaatatttaatatttg |
28514216 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 11408200 - 11408034
Alignment:
| Q |
49 |
cgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagct |
148 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||||| |||||||| |||||| ||| |||||| |||||| ||||| ||||||||||||| || |
|
|
| T |
11408200 |
cgaaggcccgtactattttcaaaaaatgaattcgggacttcgattttcacattgtggcagccttcatctttatgcacagtggcaattagaatctccaggc |
11408101 |
T |
 |
| Q |
149 |
tggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11408100 |
tggaaccatcaagcttaaaggaaaacaaatccttaagcttgccttcacataacaaatatttaatatt |
11408034 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 28143286 - 28143118
Alignment:
| Q |
47 |
ctcgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaag |
146 |
Q |
| |
|
|||||||| | ||| |||||||||||||||| || ||||||| |||||||| ||| || || | ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
28143286 |
ctcgaaggcccgtaatattttcaaaaaatgagttcgggacttcgattttcacattctgacaatcttcatccttatgcataatgacaattagaatctcaag |
28143187 |
T |
 |
| Q |
147 |
cttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28143186 |
cttggaaccatcaagcttaaatgaaaacacatccttaggcttgccttcacataacaaatatttaatatt |
28143118 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 27909191 - 27909038
Alignment:
| Q |
62 |
tattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaag |
161 |
Q |
| |
|
|||||||||||||||| || | ||||| |||||||| ||| || || | | ||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
27909191 |
tattttcaaaaaatgagttcgagactttgattttcacattctgacaatctccatccttatgcacaatgacaattagaatctcaagcttggaaccatcaag |
27909092 |
T |
 |
| Q |
162 |
cataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27909091 |
cttaaaggaaaacacatccttaggcttgccttcacataacaaatatttaatatt |
27909038 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 28129358 - 28129190
Alignment:
| Q |
47 |
ctcgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaag |
146 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||| || ||||||| |||||||| ||| || || | ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
28129358 |
ctcgaaggcccgtaatattttcaaagaatgagttcgggacttcgattttcacattctgacaatcttcatccttatgcataatgacaattagaatctcaag |
28129259 |
T |
 |
| Q |
147 |
cttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
28129258 |
cttggaaccatcaagcttaaaggaaaacacatccttaggcttgccttcacataataaatatttaatatt |
28129190 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 17750048 - 17750203
Alignment:
| Q |
60 |
actattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatca |
159 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||||| |||||| |||| | ||| |||||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
17750048 |
actattctcaaaaaatgaattcgggacttcgattttcacattgtgacagtccttatctttatgcacattgacaattagaatctcaaccttggaaccatca |
17750147 |
T |
 |
| Q |
160 |
agcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17750148 |
agcttaaaggaaaacaaatccttaagcttgccttcacataacaaatatctaatatt |
17750203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 19051368 - 19051523
Alignment:
| Q |
60 |
actattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatca |
159 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||||| |||||| |||| | ||| |||||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
19051368 |
actattctcaaaaaatgaattcgggacttcgattttcacattgtgacagtccttatctttatgcacattgacaattagaatctcaaccttggaaccatca |
19051467 |
T |
 |
| Q |
160 |
agcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19051468 |
agcttaaaggaaaacaaatccttaagcttgccttcacataacaaatatctaatatt |
19051523 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 28493083 - 28493238
Alignment:
| Q |
62 |
tattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaag |
161 |
Q |
| |
|
|||||||||||||||| || | |||| |||||||| |||||| || | |||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28493083 |
tattttcaaaaaatgagttcagaacttcgattttcagattgtgacaatcttcatccttaagcacagtgacaattagaatctcaagcttggaaccatcaag |
28493182 |
T |
 |
| Q |
162 |
cataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttg |
217 |
Q |
| |
|
| |||||||||||| ||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
28493183 |
cttaaaggaaaacaaatccttaagatttccttcacatagcaaatatttaatatttg |
28493238 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 27962212 - 27962106
Alignment:
| Q |
111 |
ttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatattta |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27962212 |
ttcatccttacgcgcagtgacaattagaatctaaagcttggaaccatcaagcttaaaggaaaacaaatccttaagcttgccttcacataacaaatattta |
27962113 |
T |
 |
| Q |
211 |
atatttg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
27962112 |
atatttg |
27962106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 27951565 - 27951409
Alignment:
| Q |
62 |
tattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaag |
161 |
Q |
| |
|
|||||| |||||||||| | ||||||| ||||||| |||||| |||| ||||||| ||||| |||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
27951565 |
tatttttaaaaaatgaaatagggacttcaattttcacattgtggcagtcttcatccatatgcacagtgataattagaatctcaagctcggaaccaccaat |
27951466 |
T |
 |
| Q |
162 |
cataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttgt |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
27951465 |
cttaaaggaaaacacatccttaagcttgcattcataaaacaaatatttaatatttgt |
27951409 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 28473091 - 28473197
Alignment:
| Q |
111 |
ttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatattta |
210 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28473091 |
ttcatccttatgcatagagacaattaaaatctcaagcttggaaccatcaatcttaaaggaaaacacatccttaagcttgccttcacataacaaatattta |
28473190 |
T |
 |
| Q |
211 |
atatttg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
28473191 |
atatttg |
28473197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 27997986 - 27997830
Alignment:
| Q |
59 |
tactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatc |
158 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||| || || ||| ||||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
27997986 |
tactattttcaaagaaggaatttgggacttcatttttcacatattggtagtcttcatccttatgcatattgacaattagaatctcaagcttggaaccacc |
27997887 |
T |
 |
| Q |
159 |
aagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27997886 |
tagcttaaaggaaaacacatccttaagctttccttcacaaaacaaatatttaatatt |
27997830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 28046839 - 28046669
Alignment:
| Q |
47 |
ctcgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaag |
146 |
Q |
| |
|
|||||||| | ||| |||||| ||||||||| || ||||||| ||||||| |||||| || | ||||| | ||||| || ||||||||||||||||| |
|
|
| T |
28046839 |
ctcgaaggcccgtaatatttttaaaaaatgagttagggacttcaattttcacattgtggcaatcttcatacgtatgcatagctacaattagaatctcaag |
28046740 |
T |
 |
| Q |
147 |
cttggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttg |
217 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
28046739 |
cttggaaccatcaaacttaaatgaaaacacatccttaatcttgccttcacataacaaatacttaatatttg |
28046669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 27465087 - 27465240
Alignment:
| Q |
62 |
tattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaag |
161 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||| || || ||| ||||||||||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
27465087 |
tattttcaaaaaatgaatcaaggacattgattttcacatcatggtagtcttcatccttatacacgacgacaattagaatctcaagcctggaaccatcaag |
27465186 |
T |
 |
| Q |
162 |
cataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
| || ||||||||||||| || ||||||||||| |||| ||||||||| ||||| |
|
|
| T |
27465187 |
cttataggaaaacacatcatttagcttgccttcgcatagcaaatatttgatatt |
27465240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 27435464 - 27435627
Alignment:
| Q |
49 |
cgaaggtctgtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagct |
148 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||| |||||| || | | |||| ||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
27435464 |
cgaaggtcattattattttcaaaaaatgaattcgggacttcatttttcacatcgcggcagtcttcatccttatacacggtgacaattagaatctcaagct |
27435563 |
T |
 |
| Q |
149 |
tggaaccatcaagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaat |
212 |
Q |
| |
|
| |||||||||| || | ||||| |||||| | | ||| ||||| || |||||||||||||| |
|
|
| T |
27435564 |
tagaaccatcaaaattatatgaaaatacatccattatctttccttcgcaaaacaaatatttaat |
27435627 |
T |
 |
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Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 9330972 - 9331132
Alignment:
| Q |
58 |
gtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccat |
157 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||||||| || | |||| ||||||||| || || ||||||||||||||||||||||||| |||| |
|
|
| T |
9330972 |
gtactattttcaaaaaatgaatttgagtcttcgattttcacatcacggcagtcttcatccttgtggacaatgacaattagaatctcaagcttggagccat |
9331071 |
T |
 |
| Q |
158 |
caagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttgt |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9331072 |
caagcttaaaggaaaacacatccttaagcttggcttcacataacaaatatttaatatttgt |
9331132 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 9384755 - 9384915
Alignment:
| Q |
58 |
gtactattttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccat |
157 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||||||| || | |||| ||||||||| || || ||||||||||||||||||||||||| |||| |
|
|
| T |
9384755 |
gtactattttcaaaaaatgaatttgagtcttcgattttcacatcacggcagtcttcatccttgtggacaatgacaattagaatctcaagcttggagccat |
9384854 |
T |
 |
| Q |
158 |
caagcataaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatttgt |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9384855 |
caagcttaaaggaaaacacatccttaagcttggcttcacataacaaatatttaatatttgt |
9384915 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 23337 - 23187
Alignment:
| Q |
65 |
tttcaaaaaatgaatttgggacttggattttcaaattgtgtcagttttcatccttatgcgcagtgacaattagaatctcaagcttggaaccatcaagcat |
164 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| ||| || || | ||||||||||| | | ||||||||||||||| |||||||||||||||| ||| | |
|
|
| T |
23337 |
tttcaaaaaatgaattcgggacttcgattttcacattatggcactcttcatccttatacacggtgacaattagaatcacaagcttggaaccatcgagctt |
23238 |
T |
 |
| Q |
165 |
aaaggaaaacacatccttaagcttgccttcacataacaaatatttaatatt |
215 |
Q |
| |
|
| | |||||||||||||| || | ||||| || ||||||||||||||||| |
|
|
| T |
23237 |
acatgaaaacacatcctttggccttccttcgcaaaacaaatatttaatatt |
23187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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