View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_3 (Length: 623)
Name: NF18997_low_3
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 42039156 - 42038845
Alignment:
| Q |
18 |
acctgcggctattcctagaagatcgtcttcagatatgattgctctaggaattttttgagcaattttattttcccacaaagaagcaagctcattcatgctg |
117 |
Q |
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| T |
42039156 |
acctgcggctattcctagaagatcgtcttcagagacgattgctctaggaatttttcgagcaattttattttcccacaaagaagcaagctcattcatgctg |
42039057 |
T |
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| Q |
118 |
taacagttggtagagggtcgaaaatgaacacttttgttgattgttctttcatcatcaacaaccttcattgtgaacttgccaatatcatagccatcaacaa |
217 |
Q |
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| T |
42039056 |
taacagttggtagagggtcgaaaatgaacacttttgttgattgttctttcatcatcaacaaccttcattgtgaacttgccaatatcatagccatcaacaa |
42038957 |
T |
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| Q |
218 |
agtaagctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatgttcagtatc |
317 |
Q |
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| T |
42038956 |
agtacgctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatgttcagtatc |
42038857 |
T |
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| Q |
318 |
acactgactaag |
329 |
Q |
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||| |||||||| |
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| T |
42038856 |
acagtgactaag |
42038845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 302 - 616
Target Start/End: Complemental strand, 42038840 - 42038526
Alignment:
| Q |
302 |
gtacatgttcagtatcacactgactaagtgagtgactttgccacaatcacatgggctcaacgtgattctggcaaaaccaccgtgatatcagacacgtact |
401 |
Q |
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| T |
42038840 |
gtacatgttcagtatcccagtgactaagtcagtgactttgccacaatcacatcggctcaacgtgattctggcaaaaccactgtgatatcagacacgtact |
42038741 |
T |
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| Q |
402 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
501 |
Q |
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| T |
42038740 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
42038641 |
T |
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| Q |
502 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgctaggcctggct |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42038640 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgcaaggcctggct |
42038541 |
T |
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| Q |
602 |
ccacaggttctgctc |
616 |
Q |
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| T |
42038540 |
ccacaggatctgctc |
42038526 |
T |
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