View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_4 (Length: 614)
Name: NF18997_low_4
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 19 - 607
Target Start/End: Original strand, 48460959 - 48461547
Alignment:
| Q |
19 |
ccacgaagttcataactcataacgtttacccaatccaaattctcgttaatggaattaaccggatacatccgtggttcaccgtagatggaaaaattcacag |
118 |
Q |
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| T |
48460959 |
ccacgaagttcataactcataacgtttacccaatccaaattctcgttaatggaattaaccggatacatccgtggttcaccgtagatggaaaaattcacag |
48461058 |
T |
|
| Q |
119 |
cgaagtaaacagcggctgtgagaagcaatggtggccggccggtggtggcgccttcatcggagatagcttttcgccattggaagagcaattctccgaggtc |
218 |
Q |
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| T |
48461059 |
cgaagtaaacagcggctgtgagaagcaacggtggccggccggtggtggcgccttcatcggagatagcttttcgccattggaagagcatttctccgaggtc |
48461158 |
T |
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| Q |
219 |
gttcatttctttagtgtttttaggaaactcccaatccaagtcaattccattgaatccaaatgtacgagcaacgttgattgtagagttaatgaaggcggca |
318 |
Q |
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| T |
48461159 |
gttcatttctttagtgtttttaggaaactcccaatccaagtcaattccatcgaatccaaatgtacgagcaacgtcgattgtagagttaatgaaggcggca |
48461258 |
T |
|
| Q |
319 |
cgtgcgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggatttggttttga |
418 |
Q |
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| T |
48461259 |
catgcgggtggatcggaggcgatgaaggccaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggattttgttttga |
48461358 |
T |
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| Q |
419 |
aggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagtttgtaggtgatgttgttgggtgtgaggaatgagtagaagatgtgagt |
518 |
Q |
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| T |
48461359 |
aggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagtttgtaggtgatgttgttgggtgtgaggaatgagtagaagatgtgagt |
48461458 |
T |
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| Q |
519 |
aaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgatgatg |
607 |
Q |
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| T |
48461459 |
aaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgatgatg |
48461547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 23 - 443
Target Start/End: Original strand, 48455507 - 48455927
Alignment:
| Q |
23 |
gaagttcataactcataacgtttacccaatccaaattctcgttaatggaattaaccggatacatccgtggttcaccgtagatggaaaaattcacagcgaa |
122 |
Q |
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| T |
48455507 |
gaagatcataactcataacattaacccaatccaaattcttgttaatagaatcaaccggatacatccgccgttcaccggagaggaaaaaattaacggcaaa |
48455606 |
T |
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| Q |
123 |
gtaaacagcggctgtgagaagcaatggtggccggccggtggtggcgccttcatcggagatagcttttcgccattggaagagcaattctccgaggtcgttc |
222 |
Q |
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| T |
48455607 |
gtaaacagcggcggtgagaagcaaaggtggccggctggtggaggttgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattc |
48455706 |
T |
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| Q |
223 |
atttctttagtgtttttaggaaactcccaatccaagtcaattccattgaatccaaatgtacgagcaacgttgattgtagagttaatgaaggcggcacgtg |
322 |
Q |
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| T |
48455707 |
atttcttttgtggttgtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtg |
48455806 |
T |
|
| Q |
323 |
cgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggatttggttttgaaggt |
422 |
Q |
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| T |
48455807 |
ccgtggggtcagaggcaatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagt |
48455906 |
T |
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| Q |
423 |
tttggtgaaagtgttgaggga |
443 |
Q |
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| T |
48455907 |
gttggtgaaagtagtgaggga |
48455927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 607
Target Start/End: Original strand, 48456000 - 48456103
Alignment:
| Q |
504 |
gtagaagatgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
603 |
Q |
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|||||| |||||||| || |||||||| |||| || ||||||||||| ||| ||||||| |||||| || ||||||||||||||| ||||||||| | |
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| T |
48456000 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagatggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggt |
48456099 |
T |
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| Q |
604 |
gatg |
607 |
Q |
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|||| |
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| T |
48456100 |
gatg |
48456103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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