View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_5 (Length: 590)
Name: NF18997_low_5
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 23 - 586
Target Start/End: Original strand, 8521829 - 8522398
Alignment:
| Q |
23 |
agattcttataaaattgtaaaatttcttgtaaaatctgtaaatgatctcctcgttgtgtccataccaaattcccagcacacttctgaatagatttcttta |
122 |
Q |
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| T |
8521829 |
agattcttataaaattgtaaaatttcttgtaaaatctgtaaatgatcgcctcgttatgtccataccaaattcccagcacacttctaaatagatttcttta |
8521928 |
T |
|
| Q |
123 |
gctaactaatcatgtaaatatcacacttatcatgtctattttttattgctttctaaagaatgtgtttaaaaagaacaagagtttgtatttattggattgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8521929 |
gctaactaatcatgtaaatatcacacttatcatgtctattttttattgttttctaaagaatgtgtttaaaaagaacaagagtttgtatttattggattgg |
8522028 |
T |
|
| Q |
223 |
ataccttttgtaaaacacaattttgtaccaactatgcaccaaataagccaaaacagaataacaaaggtaaaagggtcgtataaatttgaattatatttta |
322 |
Q |
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| T |
8522029 |
ataccttttgtaaaacacaattttgtaccaattatgcaccaaataagccaaaacagaataacaaagttaaaaaggtcatataaatttgaattatatttta |
8522128 |
T |
|
| Q |
323 |
tacactaacatatacatgaacttggaattttattatataacacaacatgtggcgtgcacttataaacagacctgagaccacaaacttacaactgaaaatc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8522129 |
tacactaacatatacatgaacttggaattttattatataacacaacttgtggcatgcacttataaacagacctgagaccataaacttacaactgaaaatc |
8522228 |
T |
|
| Q |
423 |
aaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgc |
522 |
Q |
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| T |
8522229 |
aaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaacaaaactacgacatttgc |
8522328 |
T |
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| Q |
523 |
acca------tctaattctgattcgtgattgaactatggttcctcgtcattcttgtccttcatctcactc |
586 |
Q |
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| T |
8522329 |
accatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttttcactc |
8522398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 457 - 550
Target Start/End: Original strand, 42122646 - 42122739
Alignment:
| Q |
457 |
aacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattcgtgattgaac |
550 |
Q |
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| T |
42122646 |
aacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgcaccatctgattctgattcatggttgaac |
42122739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 540
Target Start/End: Original strand, 42116886 - 42116966
Alignment:
| Q |
460 |
agaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattc |
540 |
Q |
| |
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|||||||||||| | |||| |||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
42116886 |
agaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattc |
42116966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 460 - 550
Target Start/End: Original strand, 42128044 - 42128134
Alignment:
| Q |
460 |
agaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattcgtgattgaac |
550 |
Q |
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| T |
42128044 |
agaaagtaaaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattcatggttgaac |
42128134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 42115994 - 42116084
Alignment:
| Q |
225 |
accttttgtaaaacacaattttgtaccaactatgcaccaaataagccaaaacagaataacaaaggtaaaagggtcgtataaatttgaattat |
316 |
Q |
| |
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||||||| |||||||||||| |||| ||| || || ||| ||||||||||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
42115994 |
accttttctaaaacacaattctgtaacaa-tacaaacaaaaaaagccaaaacagaattgcaaaggtaaaagggtcatataaatgtgaattat |
42116084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 42116793 - 42116854
Alignment:
| Q |
329 |
aacatatacatgaacttggaattttattatataacacaacatgtggcgtgcacttataaaca |
390 |
Q |
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| T |
42116793 |
aacatatatataaacttggaattttattatataacacatcttgtggcatgcacatgtaaaca |
42116854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 41572910 - 41572860
Alignment:
| Q |
484 |
aagagaaaataattacaacaataaaactacgacatttgcaccatctaattc |
534 |
Q |
| |
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||||||||||||| | ||||||||||||| |||| ||||||||||||||| |
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| T |
41572910 |
aagagaaaataatcagaacaataaaactatcacatctgcaccatctaattc |
41572860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 444 - 550
Target Start/End: Original strand, 11117289 - 11117396
Alignment:
| Q |
444 |
tcaagcttgttttaa-cagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattcgt |
542 |
Q |
| |
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|||||||| |||||| ||||||||||||| |||||| ||| |||||| ||| ||| |||||||||||| |||||||||||||||| |||||||||| | |
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| T |
11117289 |
tcaagcttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattcat |
11117388 |
T |
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| Q |
543 |
gattgaac |
550 |
Q |
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| T |
11117389 |
gtttgaac |
11117396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 25523943 - 25523884
Alignment:
| Q |
480 |
acaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattc |
540 |
Q |
| |
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|||||||||||||||| || |||||| |||||| |||||||||| ||||| |||||||||| |
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| T |
25523943 |
acaaaagagaaaataactaaaacaat-aaactatgacatttgcatcatctgattctgattc |
25523884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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