View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_6 (Length: 559)
Name: NF18997_low_6
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 41337967 - 41337675
Alignment:
| Q |
19 |
cacagactagaattaaaaaacatgaaaaatataataaaagaagagagaggcaacacaaataatccatctgctaacttatatagattattagtcttgaaat |
118 |
Q |
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| T |
41337967 |
cacagactagaattaaaaaacatgaaaaatataataaaagaagagagaggcaacacaaataatccatcttctaacttatatagattattagtcttgaaat |
41337868 |
T |
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| Q |
119 |
c-----tagctgcaggtctaacagggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagaga |
213 |
Q |
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| T |
41337867 |
catatctagctacaggtctaacagggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagaga |
41337768 |
T |
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| Q |
214 |
ttttgttcatcaaaattacatttattaatttatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgcagacacttcataca |
306 |
Q |
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| T |
41337767 |
ttttgttcatcaaaattacatttattaatttatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgtagacacttcataca |
41337675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 304 - 540
Target Start/End: Complemental strand, 41337624 - 41337388
Alignment:
| Q |
304 |
acagaatcatctttgataaaagaattgtctcaatgaaggttttaaagtgaaatacctctactgatgctatgccccaggttgttgttttcctgcagaggat |
403 |
Q |
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| T |
41337624 |
acagaatcatctttgataaaagaattgtttcaatgaaggttttaaagtgaaatacctctactgatgctatgccccaggttgttgttttcctgcagaggat |
41337525 |
T |
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| Q |
404 |
caataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaaccataacagaactttgaagcaataagaaagctttctgtgag |
503 |
Q |
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| T |
41337524 |
caataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaaccataacagaactttgaagcaataagaaagctttctgtgag |
41337425 |
T |
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| Q |
504 |
cagcaagtcttggcgatcttttcttggacaatcagct |
540 |
Q |
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| T |
41337424 |
cagcaagtcttggcgatcttttcttggacaatcagct |
41337388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 321 - 533
Target Start/End: Complemental strand, 36136061 - 36135841
Alignment:
| Q |
321 |
aaaagaattgtctcaatgaaggttttaaagtgaaatacctctactgatgctatgc--------cccaggttgttgttttcctgcagaggatcaataatat |
412 |
Q |
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||||||||||| | |||||||||||||||| | |||||| ||||||||||| || |||||||||||| || || |||||| ||||||||||| |
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| T |
36136061 |
aaaagaattgttccgatgaaggttttaaagttatatacctttactgatgctacgcggctacgccccaggttgttgcttgcccgcagagaatcaataatat |
36135962 |
T |
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| Q |
413 |
tgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaaccataacagaactttgaagcaataagaaagctttctgtgagcagcaagtc |
512 |
Q |
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| T |
36135961 |
tgatgtgtttggaaacaaaatgcttctcgtgattttcctggttgcaccaaccataacagaacttacaagcaataagaaagctttctgtgagcagtaagtc |
36135862 |
T |
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| Q |
513 |
ttggcgatcttttcttggaca |
533 |
Q |
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| T |
36135861 |
ttggcgatcttttcttggaca |
36135841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 36136327 - 36136230
Alignment:
| Q |
138 |
ggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatcaaaattacatt |
235 |
Q |
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| T |
36136327 |
ggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatgcttggagattttgtttatcaaaattacatt |
36136230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 36136191 - 36136129
Alignment:
| Q |
244 |
tatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgcagacacttcataca |
306 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36136191 |
tatcacactcaaaagtggaaaaatatcattgctcttaagaatatactgcagacacttcataca |
36136129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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