View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18997_low_7 (Length: 540)

Name: NF18997_low_7
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18997_low_7
NF18997_low_7
[»] chr5 (8 HSPs)
chr5 (18-530)||(24893345-24893857)
chr5 (390-522)||(24922635-24922767)
chr5 (390-522)||(24998725-24998857)
chr5 (392-523)||(24905545-24905676)
chr5 (99-162)||(24903605-24903668)
chr5 (25-174)||(24921233-24921383)
chr5 (25-174)||(24997320-24997470)
chr5 (351-396)||(24904739-24904784)
[»] scaffold0099 (1 HSPs)
scaffold0099 (390-522)||(35695-35834)
[»] chr3 (1 HSPs)
chr3 (389-458)||(33023027-33023096)


Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 24893345 - 24893857
Alignment:
Q  18 agttaacacttgcctaaaaattacaaacattaaatttcgtaaatgccaatctcgttaaggctttaatcctgagcattgtagcaaaagtgagaaacaaacc 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893345 agttaacacttgcctaacaattacaaacattaaatttcgtaaatgccaatctcgttaaggctttaatcctgagcattgtagcaaaagtgagaaacaaacc 24893444  T
Q  118 caaaagatgagcatgttgaatagaaaatattaggaaataatttcattaagaacaactcgatttcatcatcaaactgcgaagctcgatgcactaaagcctc 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893445 caaaagatgagcatgttgaatagaaaatattagcaaataatttcattaagaacaactcgatttcatcatcaaactgcgaagctcgatgcactaaagcctc 24893544  T
Q  218 cacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagtttttgatgagtggtaagtagaagtagaaggtgaaagtaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893545 cacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagtttttgatgagtggtaagtagaagtagaaggtgaaagtaa 24893644  T
Q  318 ttttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaaagagggcaacacttactcagaaattccttcatataca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893645 ttttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaaagagggcaacacttactcagaaattccttcatataca 24893744  T
Q  418 gttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctcacattagaaaatatactattcgacctag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893745 gttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctcacattagaaaatatactattcgacctag 24893844  T
Q  518 tatcccccctttg 530  Q
    |||||||||||||    
T  24893845 tatcccccctttg 24893857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 390 - 522
Target Start/End: Original strand, 24922635 - 24922767
Alignment:
Q  390 cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc 489  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |  | ||||||||||    
T  24922635 cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc 24922734  T
Q  490 acattagaaaatatactattcgacctagtatcc 522  Q
    ||||||| | |||||||||||||||||||||||    
T  24922735 acattaggagatatactattcgacctagtatcc 24922767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 390 - 522
Target Start/End: Original strand, 24998725 - 24998857
Alignment:
Q  390 cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc 489  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |  | ||||||||||    
T  24998725 cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc 24998824  T
Q  490 acattagaaaatatactattcgacctagtatcc 522  Q
    ||||||| | |||||||||||||||||||||||    
T  24998825 acattaggagatatactattcgacctagtatcc 24998857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 392 - 523
Target Start/End: Original strand, 24905545 - 24905676
Alignment:
Q  392 cttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctcac 491  Q
    |||||| |||||||||||||||||||  |||||| ||||| |  |||||||| |||||||||| ||||||||| |||||||||| || | |||||||||     
T  24905545 cttactgagaaattccttcatatacaaatccaaacgaaccactacccaaaagttcacccttttcccaactcccaggagtaataactggcatcaatctcag 24905644  T
Q  492 attagaaaatatactattcgacctagtatccc 523  Q
    |||||||||| ||| |||||| | ||||||||    
T  24905645 attagaaaatgtacaattcgagcaagtatccc 24905676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 24903605 - 24903668
Alignment:
Q  99 caaaagtgagaaacaaacccaaaagatgagcatgttgaatagaaaatattaggaaataatttca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||    
T  24903605 caaaagtgagaaacaaacccaaaagatgagcatgttgaatagaaggtattaggtaacaatttca 24903668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 24921233 - 24921383
Alignment:
Q  25 acttgcctaaaaattacaaacattaaatttcgtaaatgccaatctcgttaaggctttaatcctgagcattgtagcaaaagtgagaaacaaacccaaaaga 124  Q
    |||| ||||| | ||| |||||| |||||| ||||||| | || |  ||| ||||||  |||||||||| ||||| |||||| |||||||||||||||||    
T  24921233 acttacctaacagttataaacatcaaattttgtaaatggctatttatttagggctttgttcctgagcatagtagcgaaagtgggaaacaaacccaaaaga 24921332  T
Q  125 tg-agcatgttgaatagaaaatattaggaaataatttcattaagaacaact 174  Q
    || |||||| ||||||||| ||||| |   |||||||||  ||||||||||    
T  24921333 tgaagcatgctgaatagaagatattggacgataatttcaccaagaacaact 24921383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 24997320 - 24997470
Alignment:
Q  25 acttgcctaaaaattacaaacattaaatttcgtaaatgccaatctcgttaaggctttaatcctgagcattgtagcaaaagtgagaaacaaacccaaaaga 124  Q
    |||| ||||| | ||| |||||| |||||| ||||||| | || |  ||| ||||||  |||||||||| ||||| |||||| |||||||||||||||||    
T  24997320 acttacctaacagttataaacatcaaattttgtaaatggctatttatttagggctttgttcctgagcatagtagcgaaagtgggaaacaaacccaaaaga 24997419  T
Q  125 tg-agcatgttgaatagaaaatattaggaaataatttcattaagaacaact 174  Q
    || |||||| ||||||||| ||||| |   |||||||||  ||||||||||    
T  24997420 tgaagcatgctgaatagaagatattggacgataatttcaccaagaacaact 24997470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 24904739 - 24904784
Alignment:
Q  351 aatgatagaaacgagaaaagacacaagtaaagagggcaacacttac 396  Q
    |||| ||||||||| | |||| ||||||||||||||||||||||||    
T  24904739 aatggtagaaacgaaataagatacaagtaaagagggcaacacttac 24904784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 390 - 522
Target Start/End: Original strand, 35695 - 35834
Alignment:
Q  390 cacttactcagaaattcctt-catatacagttccaaatgaaccgcggccc-aaaagctcaccc-ttttgccaactcccgggagtaa--taagtgacttc- 483  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |||||||  ||   ||||||     
T  35695 cacttactcagaaattccttacatatacagttccaaatgaaccacggcccaaaaagctcaccctttttgccaactcccaggagtaatttacaggacttca 35794  T
Q  484 aatctcacatt-agaaaatatactattcgacctagtatcc 522  Q
    ||||||||||| || | |||||||||||||||||||||||    
T  35795 aatctcacattaaggagatatactattcgacctagtatcc 35834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 33023027 - 33023096
Alignment:
Q  389 acacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgcca 458  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |  |||||||   |||||||||||||    
T  33023027 acacttactcagaaattccttcatagacagatccaaatgaaccaccccccaaaaagccacccttttgcca 33023096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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