View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_8 (Length: 529)
Name: NF18997_low_8
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 219 - 512
Target Start/End: Original strand, 22090381 - 22090674
Alignment:
| Q |
219 |
tagtatcaaagtatagagaatatgacaaaccatccttcaatgaatttcaaccataacataccttatatcaaattcttctgagttcttcactgcttccata |
318 |
Q |
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| T |
22090381 |
tagtatcagagtacagagaatatgaaaaaccatccttcaatgaatttcaaccataacataccttatatcaaattcttctgatttcttcactgcttccata |
22090480 |
T |
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| Q |
319 |
gcagctttcttagcttgattgttcaaatgaagattggagcagaatcgcctctaaagtttgagacgaatatttggttagtaacatcaaagaaatccactca |
418 |
Q |
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| T |
22090481 |
gcagctttcctagcttgattgttcaaatcaatagtggagcagaatcgcctctaaagtttgagatgaatatttggttagtaacatcaaagaaatccactca |
22090580 |
T |
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| Q |
419 |
aattttcgatgagatatccacactaacgcactacttaaaaagcaatacatgctacaaatcaacaaaggaaactcaccataaagtctccagcatt |
512 |
Q |
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| T |
22090581 |
aattttcgatgagatatccacactaatgcactacttaaaaagcaatacatgctacaaatcaacaaaggaaactcaccataaagtctccagcatt |
22090674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 22089409 - 22089454
Alignment:
| Q |
69 |
tataacctccttggattgttccattcatacacacatgctattttgg |
114 |
Q |
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| T |
22089409 |
tataacctcctcggaatgttccattcatacacacatgcaattttgg |
22089454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22089277 - 22089317
Alignment:
| Q |
19 |
taataacagcatttctccgacgattatgaaacctataacaa |
59 |
Q |
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| T |
22089277 |
taataacaacatttctccgacgattatgaaacctacaacaa |
22089317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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