View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18997_low_9 (Length: 502)
Name: NF18997_low_9
Description: NF18997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18997_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 127 - 486
Target Start/End: Original strand, 19506158 - 19506517
Alignment:
| Q |
127 |
cttgagaaatgaatttgattcttgatccaaattccttaggcagaagagaatggaacaaaatgtggaacaggcttgcacttcaatggtttagccaaaaaca |
226 |
Q |
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| T |
19506158 |
cttgagaaatgaatttgattcttgatccaaattccttaggcagaagagaatggaacaaaatgtggaacaggcttgcacttcaatggtttagccaaaaaca |
19506257 |
T |
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| Q |
227 |
cagtaacccttcctacttcagacatatcaatatcatgactcttaccatcattaacaacccaatcaaagcattgtatcaaacttgcaagtgttgcttgtat |
326 |
Q |
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| T |
19506258 |
cagtaacccttcctacttcagacatatcaatatcatgactcttaccatcattaacaacccaatcaaagcattgtatcaaacttgcaagtgttgcttgtat |
19506357 |
T |
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| Q |
327 |
aacaagcaaagcaagtgaagaaccagggcaacttcttctcccactaccaaatggtaaaagttgataatattgtccccttacatcaattttactcttgcta |
426 |
Q |
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| T |
19506358 |
aacaagcaaagcaagtgaagaaccagggcaacttcttctcccactaccaaatggtaaaagttgataatattgtccccttacatcaattttactcttgcta |
19506457 |
T |
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| Q |
427 |
ggatcatcactttgtaagaatctttcagggttaaacactaatggattgtcccaatagtta |
486 |
Q |
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| T |
19506458 |
ggatcatcactttgtaagaatctttcagggttaaacactaatggattgtcccaatagtta |
19506517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 19506040 - 19506103
Alignment:
| Q |
9 |
gagaagaattggattacctaatcacttatttttatcctgccaagaagttttcacatacacttcc |
72 |
Q |
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| T |
19506040 |
gagaagaattggattacctaatcacttatttttatcctgccaagaagttttcacatacacttcc |
19506103 |
T |
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