View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18998_high_10 (Length: 267)
Name: NF18998_high_10
Description: NF18998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18998_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 25439965 - 25439828
Alignment:
| Q |
104 |
ccttcccaccgcttcctttcccctcatctcccacccatagctacaaccctcaaccacggctcctctctccgaccattgaccattgataactgtcgtcatt |
203 |
Q |
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| T |
25439965 |
ccttcccaccgcttcctttcccctcatctcccacccatagctacaacccccaaccacggctcctctctccgaccattgaccattgataactgtcgtcatt |
25439866 |
T |
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| Q |
204 |
tcgccgttcctccttctcagttcgcacaaacaacaaca |
241 |
Q |
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| T |
25439865 |
tcgccgttcctccttctcagttcgcacaaacaacaaca |
25439828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 25440068 - 25440025
Alignment:
| Q |
11 |
cacagaatatgaaacacaatacagataccgtataaaatactgca |
54 |
Q |
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| T |
25440068 |
cacaaaatatgaaacacaatacagacaccatataaaatactgca |
25440025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 36829770 - 36829886
Alignment:
| Q |
132 |
tcccacccatagctacaaccctcaaccacggctcctctctccgaccattgaccattgataactgtcgtcatttcgccgttcctccttctcagttcgcaca |
231 |
Q |
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| T |
36829770 |
tcccacccataactacaaccaccaaccatggctcctccc--cgaccattgaccaccaacaatcgtcgtcatttcgctcctcctccttctcagtttgcacc |
36829867 |
T |
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| Q |
232 |
aacaacaacagcacctctc |
250 |
Q |
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|||| || || |||||||| |
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| T |
36829868 |
aacaccaccaccacctctc |
36829886 |
T |
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