View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18998_high_9 (Length: 284)
Name: NF18998_high_9
Description: NF18998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18998_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 28927891 - 28927622
Alignment:
| Q |
5 |
aattaatcaatagttttcnnnnnnnncctttaaaattttcttatttactgatagatagtttattaggttttcaatgaaattaatttttaatctaatattt |
104 |
Q |
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| T |
28927891 |
aattaatcaatagttttcttttttttcctttaaaattttcttatttactgatagatagtttattagcttttcaatgaaattaatttttaatctaatattt |
28927792 |
T |
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| Q |
105 |
tccccaaatgaacagtgtgttcatactccaaagtcattacatgaaattgattgagtaacatttatttattgttagtagccctgacacctgtggtggaagg |
204 |
Q |
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| T |
28927791 |
tccccaaatgaacagtgtgttcatactccaaagtcattacatgaaattgattgagtaacatttatttattgttagtagccctgacacctgtgatggaagg |
28927692 |
T |
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| Q |
205 |
agtgttcgacattgacacatgtgtgtgtgatcatgttcatttaattgactttttcaaacttttacctttg |
274 |
Q |
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| T |
28927691 |
agcattcgacattgacacatgtgtgtgagatcatgttcatttaattgactttttcaaacttttacctttg |
28927622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 28904830 - 28904773
Alignment:
| Q |
152 |
tgattgagtaacatttatttattgttagtagccctgacacctgtggtggaaggagtgt |
209 |
Q |
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| T |
28904830 |
tgattgagtaacatttatttattgttagtagcactgacacttgtgatggaaggcgtgt |
28904773 |
T |
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