View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18998_low_14 (Length: 242)
Name: NF18998_low_14
Description: NF18998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18998_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 22428030 - 22428247
Alignment:
| Q |
18 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatttattagcagcacatcttctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22428030 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatttatcagcagcacatcttctc |
22428129 |
T |
|
| Q |
118 |
ctcaaaatcttgcaagcagcacaaggactcataacaacagcttgagtagatgaagaagtaggagcattgaaagtgtcactagtagcactctccatgttac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22428130 |
ctcaaaatcttgcaagcagcacaaggactcataacaacagcttgagtagatgaagaagtaggagcagtgaaagtgtcactagtagcactctccatgttac |
22428229 |
T |
|
| Q |
218 |
taataacactcccctttg |
235 |
Q |
| |
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|||||||||||||||||| |
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| T |
22428230 |
taataacactcccctttg |
22428247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 28057601 - 28057748
Alignment:
| Q |
18 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagta--ggaggaaaataaggtgccaaaacacatttattagcagcacatcttc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||| |||| | ||| |||||||| |
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| T |
28057601 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcaggatcagtataggaggaaaataagatgccaaagcacacttatcaacagtacatcttc |
28057700 |
T |
|
| Q |
116 |
tcctcaaaatcttgcaagcagcacaaggactcataacaacagcttgag |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28057701 |
tcctcaaaatcttgcaagcagcacaaggactcataacaacaacttgag |
28057748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 35958685 - 35958538
Alignment:
| Q |
18 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagta--ggaggaaaataaggtgccaaaacacatttattagcagcacatcttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||| | ||| |||||||| |
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| T |
35958685 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcaggatcagtataggaggaaaataagatgccaaaacacacttatcaacagtacatcttc |
35958586 |
T |
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| Q |
116 |
tcctcaaaatcttgcaagcagcacaaggactcataacaacagcttgag |
163 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
35958585 |
tcctcaaaatcttgcaagcagcacaagaactcataacaacaacttgag |
35958538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 43142012 - 43142074
Alignment:
| Q |
18 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaata |
80 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| |||||| || ||||| ||||||||||| |
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| T |
43142012 |
gttgctagctccaaagactctatgagcaatggtgaacttgagtggatcagttggaggaaaata |
43142074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 39790413 - 39790285
Alignment:
| Q |
18 |
gttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatttattagcagcacatcttctc |
117 |
Q |
| |
|
||||||||||||||| || | |||||| ||||||| |||| ||| || || ||||| ||||||||||||||||||||||| | ||||||||||||| |
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| T |
39790413 |
gttgctagcaccaaatacacggtgagcagtggtaaatttggaaggttccgtgggagggaaataaggtgccaaaacacatttct---cagcacatcttctt |
39790317 |
T |
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| Q |
118 |
ctcaaaatcttgcaagcagcacaaggactcat |
149 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
39790316 |
cttaaaatcttgcaagcagcacaaggactcat |
39790285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 41983375 - 41983435
Alignment:
| Q |
45 |
aatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatttattagca |
105 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||||||||||||||||||| |||| |
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| T |
41983375 |
aatggtaaacttggcaggttcagtggaagagaaataaggtgccaaaacacatttatcagca |
41983435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 13171748 - 13171696
Alignment:
| Q |
45 |
aatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatt |
97 |
Q |
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|||||||||||||||||| ||||| |||| |||||||||| ||||||||||| |
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| T |
13171748 |
aatggtaaacttggcaggttcagtgggagagaaataaggtgtcaaaacacatt |
13171696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 44680924 - 44680836
Alignment:
| Q |
45 |
aatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatttattagcagcacatcttctcctcaaaatcttgcaagcagcaca |
140 |
Q |
| |
|
|||||||||||||||| | ||||| ||| ||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||| |
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| T |
44680924 |
aatggtaaacttggcaagttcagtgagagagaaataaggtgccaaaacacatttatcaaca----atctt---ctcaaaatcttgcaagcagcaca |
44680836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 44691652 - 44691585
Alignment:
| Q |
76 |
aaataaggtgccaaaacacatttattagcagcacatcttctcctcaaaatcttgcaagcagcacaaggactc |
147 |
Q |
| |
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||||||||||||||||||||||||| | || || ||||| |||||||||||||||||| ||||| ||||| |
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| T |
44691652 |
aaataaggtgccaaaacacatttatcaccacca-atctt---ctcaaaatcttgcaagcatcacaacgactc |
44691585 |
T |
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