View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18998_low_3 (Length: 615)
Name: NF18998_low_3
Description: NF18998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18998_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 24564086 - 24564674
Alignment:
| Q |
18 |
tatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctctattgcaaagcaagaaaccaaagagaaggcaatatat |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564086 |
tatctcatcatcatttatgtgtgatcaccgttaaaaatcattttcatcatcttccaatcgctctattgcaaagcaagaaaccaaagagaaggcaatatat |
24564185 |
T |
|
| Q |
118 |
gaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaacnnnnnn |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564186 |
gaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaacaaaaaa |
24564285 |
T |
|
| Q |
218 |
nntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagacca |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564286 |
a-tcaatgtgattaagacatgaaatgatcgttgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagacca |
24564384 |
T |
|
| Q |
318 |
agttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564385 |
agttactcaatgaatatggtttggaatgggtattaaatgtattggcatgtataaagcatcggaatatacacagagacactaacatctgaacaccgacaat |
24564484 |
T |
|
| Q |
418 |
tattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgatta |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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|
| T |
24564485 |
tattttaaaaaataatataattcaatgtaatcacatgtatctatattttgtaggcgacgaatacgggaacgtatcagacacc-aaacacgcctatgatta |
24564583 |
T |
|
| Q |
518 |
taagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatataaggaagtcccagtataatct |
608 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24564584 |
taagcgtcgatgccacataaattagtattgcaattcaccaaatgaaaattacattcacttcaattgatataaggaagtcccagtagaatct |
24564674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 230 - 597
Target Start/End: Original strand, 9800524 - 9800890
Alignment:
| Q |
230 |
taagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg |
329 |
Q |
| |
|
|||| |||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
9800524 |
taagccatgtaatgatcattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatg |
9800623 |
T |
|
| Q |
330 |
aatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaa |
429 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
9800624 |
aatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaa |
9800722 |
T |
|
| Q |
430 |
taatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgatt-ataagcgtcgat |
528 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| ||| | ||||| |||||||||||||||| |||||| ||||| |
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|
| T |
9800723 |
taatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatgattaataagcttcgat |
9800821 |
T |
|
| Q |
529 |
gacacataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatataaggaagtcc |
597 |
Q |
| |
|
| ||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
9800822 |
gctacataaattagcattgcaatttaccaaatgaaaattacattcatttcaattgatataaggaagtcc |
9800890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 9798995 - 9799190
Alignment:
| Q |
18 |
tatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctc-tattgcaaagcaagaaaccaaagagaaggcaatata |
116 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
9798995 |
tatcttaccatcatttatgtgtgattaccgttaaagatccttttcaccatcttccggtcgctcatattgcaaagcaagataccaaagagaaagcaacata |
9799094 |
T |
|
| Q |
117 |
tgaacatgaagt--ggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaa |
210 |
Q |
| |
|
||||||||||| |||||||||| ||| || |||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
9799095 |
tgaacatgaagccgggggtaaaatgtagctactggatgaaagaaagatttatttctgaaagcaacagtaaattaaatcaacgtgactttgttacaa |
9799190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 84 - 439
Target Start/End: Complemental strand, 45535313 - 45534957
Alignment:
| Q |
84 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagta |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
45535313 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagcggggtaaaatgtagctaatggataaaagaaagttttaattctgaaagtaatagtt |
45535214 |
T |
|
| Q |
184 |
aattacttcaacgtgactttgttacaacnnnnnnnn-tcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
282 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
45535213 |
aattaaatcaatgtgactttgttacaacaaaaaaaaatcaatgcgattaagagatgtaatgatcattgcagttgagaaaggccatacggccccttaactt |
45535114 |
T |
|
| Q |
283 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaat |
382 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||| | | || |
|
|
| T |
45535113 |
agctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacat |
45535014 |
T |
|
| Q |
383 |
atacacagagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
439 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
45535013 |
atacatagagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 83 - 580
Target Start/End: Original strand, 44338195 - 44338689
Alignment:
| Q |
83 |
ttgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagt |
182 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| | || |||| |||||||||||||||||||||||| | |
|
|
| T |
44338195 |
ttgcaaagcaagaaatcaaagagaaggcaatat--gaacatgaagtagggtaaaaagtaggtaattgataaaataaagttttatttctgaaagcaataat |
44338292 |
T |
|
| Q |
183 |
aaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
282 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||| |||| ||| |||||||| ||||||| |||||||||||||||| |||||| || |
|
|
| T |
44338293 |
aaattaaatcaacgtgactttgt---aaccaaaaaaacaaatgtgatcaagagatgtaatgatcactgcagttcagaaaggccatatggctccttaaatt |
44338389 |
T |
|
| Q |
283 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatg-aatatggtttgg-aatgggtattaaatgtattagcatgtataaagaatcgga |
380 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||||||| |||||| || |||||| || ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
44338390 |
agttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgac |
44338489 |
T |
|
| Q |
381 |
atatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaata |
480 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |||||||| ||| | |||||| | |||| |||||||||| ||||||||||||| ||| | |||||| |
|
|
| T |
44338490 |
atatacccagagacattaacatgtgaacaaagacaatta-tttgagaaataacacaattaaatataatcatatgtatctatatcatgtcgatctcgaata |
44338588 |
T |
|
| Q |
481 |
cggggacgtatcaaacac-caaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttca |
579 |
Q |
| |
|
||||||| || |||| | | |||| | |||||| |||||| | |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44338589 |
ttgggacgtttcggacacgctagacacacatatgataataagcattgatgctacataaattagcattgcaattcaccaaatgaaaattacattcacttca |
44338688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 475 - 590
Target Start/End: Complemental strand, 45534943 - 45534829
Alignment:
| Q |
475 |
cgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattca |
574 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
45534943 |
cgaatacggggacgtattagacaccaaa-catgcctatgattataagtgtcgacgctacataaattagcattgcaattcaccaaataaaaattacattca |
45534845 |
T |
|
| Q |
575 |
cttcaattgatataag |
590 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
45534844 |
cttcaattgacataag |
45534829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 45535653 - 45535593
Alignment:
| Q |
18 |
tatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgct |
79 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45535653 |
tatctcaccatcatttatgtgtgttcac-gttaaaaatcattttcaccatcttccaatcgct |
45535593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44337908 - 44337971
Alignment:
| Q |
18 |
tatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctct |
81 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
44337908 |
tatctcaccataatttatgtatgatcatcgttagaaatcattttcaccatcttccaattgctct |
44337971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 458
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
422 |
ttaaaaaataatataattcaatataatcacatgtatc |
458 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
406 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
455 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 587
Target Start/End: Original strand, 23095791 - 23095846
Alignment:
| Q |
532 |
acataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatat |
587 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||| || ||||||| |
|
|
| T |
23095791 |
acataaattagcattgcaatttaccaaatgaaaattaccttcactacagttgatat |
23095846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
419 |
attttaaaaaataatataattcaatataatcacatgtatct |
459 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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