View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18998_low_7 (Length: 459)

Name: NF18998_low_7
Description: NF18998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18998_low_7
NF18998_low_7
[»] chr5 (18 HSPs)
chr5 (15-447)||(9674932-9675364)
chr5 (286-404)||(10105623-10105742)
chr5 (123-267)||(9683004-9683145)
chr5 (286-397)||(9660504-9660616)
chr5 (289-404)||(12109607-12109723)
chr5 (171-391)||(10216061-10216271)
chr5 (286-388)||(10209959-10210063)
chr5 (294-388)||(10109062-10109158)
chr5 (294-404)||(12104766-12104877)
chr5 (190-271)||(10108670-10108748)
chr5 (286-404)||(10212535-10212654)
chr5 (294-396)||(12107756-12107859)
chr5 (287-385)||(13855794-13855895)
chr5 (172-244)||(10210401-10210477)
chr5 (25-77)||(10212834-10212882)
chr5 (90-127)||(9683110-9683147)
chr5 (26-87)||(10105394-10105454)
chr5 (286-330)||(9726903-9726947)
[»] chr4 (2 HSPs)
chr4 (294-378)||(54747199-54747285)
chr4 (294-378)||(54763926-54764012)
[»] chr3 (1 HSPs)
chr3 (294-408)||(46445943-46446059)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Complemental strand, 9675364 - 9674932
Alignment:
Q  15 gagtcgtatgaaggtgttagatcagcttatcctggatccatcctttgtaattccatcaacacagtgtttgtctcctaaaggaatggtagctaggggaata 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675364 gagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgtttgtctcctaaaggaatggtagctaggggaata 9675265  T
Q  115 cgcatcacaaggaatggtggctagggaaatatgcatcacaaggagtgctatatattcagatgtatcaaattgctatgtggtgtatcctcctaaatgtaaa 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675264 cgcatcacaaggaatggtggctagggaaatttgcatcacaaggagtgctatatattcagatgtatcaaattgctatgtggtgtatcctcctaaatgtaaa 9675165  T
Q  215 acagatttaatctctgcattttgttaagcaccaggagcatattaaacatgagaaaggtacatgataggcatatgaatggttaatgttctagctttgagat 314  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675164 acagatttaatctctgcattttgttaagcatcaggggcatattaaacatgagaaaggtacatgataggcatatgaatggttaatgttctagctttgagat 9675065  T
Q  315 atcaaagaaaactaaatgatttaaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtgaatgattgaatagtggaagattgtgata 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9675064 atcaaagaaaactaaatgatttaaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtgaatgattgaatagtggaagattgtgaca 9674965  T
Q  415 acaagttcattgtcgagaactagaaagggaagt 447  Q
    |||||||||||||||||||||||||||||||||    
T  9674964 acaagttcattgtcgagaactagaaagggaagt 9674932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 10105623 - 10105742
Alignment:
Q  286 atgaatggttaatgttctagctttgagatatcaaagaaaactaaatgatttaaa-catatgatattgaagagaaaagattaaacatttcaaataaatgtg 384  Q
    ||||||| |||||||||||||||||||||||  |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||    
T  10105623 atgaatgtttaatgttctagctttgagatattgaagaaaactatatgatttaaaacatatgaaattgaagagaaaagattaaacatttcaaataaatatg 10105722  T
Q  385 tgaatgattgaatagtggaa 404  Q
    || |||| ||||||| ||||    
T  10105723 tggatgagtgaataggggaa 10105742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 9683145 - 9683004
Alignment:
Q  123 aaggaatggtggctagggaaatatgcatcacaaggagtgctatatattcagatgtatcaaattgctatgtggtgtatcctcctaaatgtaaaacagattt 222  Q
    |||||||||| ||||||| ||||||||||||||||||| | ||| |  |||||||||||||||||| |||||| |||||||||| |||||| | || |||    
T  9683145 aaggaatggttgctaggggaatatgcatcacaaggagttccataaagccagatgtatcaaattgctctgtggtttatcctcctagatgtaagaaagtttt 9683046  T
Q  223 aatctctgcattttgttaagcaccaggagcatattaaacatgaga 267  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||||    
T  9683045 aatctctgcattttgttaatca--agg-gcatattaaacatgaga 9683004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 286 - 397
Target Start/End: Complemental strand, 9660616 - 9660504
Alignment:
Q  286 atgaatggttaatgttctagctttgagatatcaaagaaaactaaatgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgtg 384  Q
    ||||||| ||||||||||||||| |||||||  |||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||||    
T  9660616 atgaatgtttaatgttctagcttagagatattgaagaaaactaaatgattttaaacatatgaaatcgaagagaaaagattaaacctttcaaataaatgtg 9660517  T
Q  385 tgaatgattgaat 397  Q
    || |||| |||||    
T  9660516 tggatgagtgaat 9660504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 12109723 - 12109607
Alignment:
Q  289 aatggttaatgttctagctttgagatatcaaagaaaactaaatgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtga 387  Q
    |||| ||||||||||||||| |||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||     
T  12109723 aatgtttaatgttctagcttagagatattgaagaaaactaaatgattttaaacatatgaaattgaagagaaaagattaaacctttcaaataaatgcgtgg 12109624  T
Q  388 atgattgaatagtggaa 404  Q
    |||| ||||||| ||||    
T  12109623 atgagtgaataggggaa 12109607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 391
Target Start/End: Complemental strand, 10216271 - 10216061
Alignment:
Q  171 cagatgtatcaaattgctatgtggtgtatcctcctaaatgtaaaacagatttaatctctgcattttgttaagcaccaggagcatattaaacatgagaaag 270  Q
    |||||||||||||||||| |||||||||||||| || |||||| ||| ||| |||   ||||||||||||||||   || | ||||||||||||||||||    
T  10216271 cagatgtatcaaattgctctgtggtgtatcctcttagatgtaagacaaattaaattaatgcattttgttaagca---ggggtatattaaacatgagaaag 10216175  T
Q  271 gtacatgataggcatatgaatggttaatgttctagctttgagatatcaaagaaaactaaa-tgattt-aaacatatgatattgaagagaaaagattaaac 368  Q
    | | ||||       ||  ||| |||||| ||||||||| ||||||  |||||||||||| |||||| ||||| |||| |||||||||||||||||||||    
T  10216174 gcatatga-------at--atgtttaatgctctagctttcagatattgaagaaaactaaaatgattttaaacacatgaaattgaagagaaaagattaaac 10216084  T
Q  369 atttcaaataaatgtgtgaatga 391  Q
     ||||||||||||||||| ||||    
T  10216083 ctttcaaataaatgtgtggatga 10216061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 10210063 - 10209959
Alignment:
Q  286 atgaatggttaatgttctagctttgagatatcaaagaaaactaaa-tgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgt 383  Q
    ||||||| ||||||||||||||||||||| |  |||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  10210063 atgaatgtttaatgttctagctttgagatgttgaagaaaactaaaatgattttaaacacatgaaattgaagagaaaagattaaacatttcaaataaatgt 10209964  T
Q  384 gtgaa 388  Q
    |||||    
T  10209963 gtgaa 10209959  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 10109062 - 10109158
Alignment:
Q  294 ttaatgttctagctttgagatatcaaagaaaactaaa-tgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtgaa 388  Q
    |||||||||||| |||||||| |   ||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  10109062 ttaatgttctagttttgagatgttgcagaaaactaaaatgattttaaacacatgaaattgaagagaaaagattaaacatttcaaataaatgtgtgaa 10109158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 404
Target Start/End: Complemental strand, 12104877 - 12104766
Alignment:
Q  294 ttaatgttctagctttgagatatcaaagaaaactaaatgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtgaatgat 392  Q
    ||||||||||| |||||||||||   ||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||  |||||| ||||     
T  12104877 ttaatgttctaactttgagatattgtagaaaactaaatgattttaaacacatgaaattgaagagaaaagattaaatatttcaaataggtgtgtggatgag 12104778  T
Q  393 tgaatagtggaa 404  Q
    | ||||| ||||    
T  12104777 taaataggggaa 12104766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 10108670 - 10108748
Alignment:
Q  190 tgtggtgtatcctcctaaatgtaaaacagatttaatctctgcattttgttaagcaccaggagcatattaaacatgagaaagg 271  Q
    |||||||||||||| || |||||| ||||||| |||||||||||||| |||||   |||| |||||||||||||||||||||    
T  10108670 tgtggtgtatcctcttagatgtaagacagattaaatctctgcattttcttaag---caggggcatattaaacatgagaaagg 10108748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 404
Target Start/End: Complemental strand, 10212654 - 10212535
Alignment:
Q  286 atgaatggttaatgttctagctttgagatatcaaagaaaactaaatgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgtg 384  Q
    ||||||| ||||| ||||||||||||||| |  |||||||||| ||||||| ||||| |||| |||| ||||||| |||||| | |||  ||||||||||    
T  10212654 atgaatgattaatattctagctttgagatgttgaagaaaactagatgattttaaacacatgaaattggagagaaaggattaatccttttgaataaatgtg 10212555  T
Q  385 tgaatgattgaatagtggaa 404  Q
    || |||| ||||||| ||||    
T  10212554 tggatgagtgaataggggaa 10212535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 12107859 - 12107756
Alignment:
Q  294 ttaatgttctagctttgagatatcaaagaaaactaaatgattt-aaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtgaatgat 392  Q
    ||||| || ||| ||||||||||  |||||||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| | || |||||||||||     
T  12107859 ttaatcttttagatttgagatattgaagaaaactaaatgattttaaatatatgaaattgaagagaaaatattaagcatttcagaaaattgtgtgaatgag 12107760  T
Q  393 tgaa 396  Q
    ||||    
T  12107759 tgaa 12107756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 13855794 - 13855895
Alignment:
Q  287 tgaatggttaatgttctagctttgagatatcaaagaaaactaaa-tgattt-aaacatatgatattgaagagaaaa-gattaaacatttcaaataaatgt 383  Q
    ||||||||||||||||||| ||||||||||   ||||||||||| |||||| ||||  |||| ||  ||||||||| |||||||||||||||||||||||    
T  13855794 tgaatggttaatgttctagttttgagatattgcagaaaactaaaatgattttaaacgcatgaaatcaaagagaaaaagattaaacatttcaaataaatgt 13855893  T
Q  384 gt 385  Q
    ||    
T  13855894 gt 13855895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 10210477 - 10210401
Alignment:
Q  172 agatgtatcaaa-ttgctatgtggtgtatcctcct---aaatgtaaaacagatttaatctctgcattttgttaagca 244  Q
    |||||||||||| ||||| ||||||||||||||||   | |||||| |||||||||||||| |||||||||||||||    
T  10210477 agatgtatcaaaattgctctgtggtgtatcctcctcttagatgtaagacagatttaatctcggcattttgttaagca 10210401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 10212882 - 10212834
Alignment:
Q  25 aaggtgttagatcagcttatcctggatccatcctttgtaattccatcaacaca 77  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  10212882 aaggtgttagatcagcttat----gatccatcctttgtaattccatcaacaca 10212834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9683147 - 9683110
Alignment:
Q  90 taaaggaatggtagctaggggaatacgcatcacaagga 127  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  9683147 taaaggaatggttgctaggggaatatgcatcacaagga 9683110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 10105394 - 10105454
Alignment:
Q  26 aggtgttagatcagcttatcctggatccatcctttgtaattccatcaacacagtgtttgtct 87  Q
    |||||| ||||||||||||| ||||||| ||||| ||||| ||||||||||| | |||||||    
T  10105394 aggtgtcagatcagcttatc-tggatccttccttcgtaataccatcaacacaatctttgtct 10105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 9726903 - 9726947
Alignment:
Q  286 atgaatggttaatgttctagctttgagatatcaaagaaaactaaa 330  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||    
T  9726903 atgaatgtttaatattctagctttgagatattgaagaaaactaaa 9726947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 54747199 - 54747285
Alignment:
Q  294 ttaatgttctagctttgagatatcaaagaaa-actaaatga-tttaaacatatgatattgaagagaaaagattaaacatttcaaata 378  Q
    ||||||||||||||||||| |||  |||||| |  ||| || ||||| ||||||| |||||||||||||||||||||||| ||||||    
T  54747199 ttaatgttctagctttgaggtattgaagaaataaaaaaagattttaagcatatgaaattgaagagaaaagattaaacattccaaata 54747285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 54763926 - 54764012
Alignment:
Q  294 ttaatgttctagctttgagatatcaaagaaa-actaaatga-tttaaacatatgatattgaagagaaaagattaaacatttcaaata 378  Q
    ||||||||||||||||||| |||  |||||| |  ||| || ||||| ||||||| |||||||||||||||||||||||| ||||||    
T  54763926 ttaatgttctagctttgaggtattgaagaaataaaaaaagattttaagcatatgaaattgaagagaaaagattaaacattccaaata 54764012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 408
Target Start/End: Original strand, 46445943 - 46446059
Alignment:
Q  294 ttaatgttctagctttgagatatcaaagaaaact-aaatgatt-taaacatatgatattgaagagaaaagattaaacatttcaaataaatgtgtgaatga 391  Q
    ||||| ||||| |||||||||||  |||||| || |||||||| ||||| ||||| ||||||||| ||||||| |||||  ||| ||  |||||| ||||    
T  46445943 ttaatcttctacctttgagatattgaagaaatctaaaatgattgtaaacgtatgagattgaagagcaaagatttaacatgccaagtaggtgtgtggatga 46446042  T
Q  392 ttgaatagtggaagatt 408  Q
     |||||||  |||||||    
T  46446043 ctgaataggagaagatt 46446059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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