View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18998_low_8 (Length: 298)
Name: NF18998_low_8
Description: NF18998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18998_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 11136677 - 11136947
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttaccttttaaccttattttgattatgcttataagttgtttcttaatgtgattattattgttgtttttcgca |
111 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11136677 |
atcatcactacccctaagtgagtttttcttaccttgtaaccttattttgattatgcttataagttctttcttaatgtgattattattgttgtttttcgca |
11136776 |
T |
|
| Q |
112 |
gtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136777 |
gtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaa |
11136876 |
T |
|
| Q |
212 |
actcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaattaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11136877 |
actcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaattaa |
11136947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 23258258 - 23258061
Alignment:
| Q |
80 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaa |
179 |
Q |
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||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
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| T |
23258258 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23258160 |
T |
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| Q |
180 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaa |
278 |
Q |
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| T |
23258159 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaa |
23258061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 23276136 - 23275939
Alignment:
| Q |
80 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaa |
179 |
Q |
| |
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||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
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| T |
23276136 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23276038 |
T |
|
| Q |
180 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaa |
278 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23276037 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaa |
23275939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 27542896 - 27542700
Alignment:
| Q |
81 |
cttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaag |
180 |
Q |
| |
|
|||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| || | |
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| T |
27542896 |
cttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcgctatcgcctacggttctgcagg |
27542798 |
T |
|
| Q |
181 |
ctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaa |
278 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27542797 |
ctgctttcaatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaa |
27542700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 23268572 - 23268518
Alignment:
| Q |
224 |
aaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaa |
278 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23268572 |
aaagaggaccgctgatgccattttcttccctcctccaaattaaagtagaatggaa |
23268518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 23258593 - 23258555
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttaccttttaa |
50 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
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| T |
23258593 |
atcatcactacccctaagtaagtttttcttaacttttaa |
23258555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 23276471 - 23276433
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttaccttttaa |
50 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
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| T |
23276471 |
atcatcactacccctaagtaagtttttcttaacttttaa |
23276433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 27542996 - 27542963
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttacct |
45 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
27542996 |
atcatcaccacccctaagtgagtttttcttacct |
27542963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 8985467 - 8985282
Alignment:
| Q |
88 |
tgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaagctgcttt |
187 |
Q |
| |
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||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||| || ||||||| |
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| T |
8985467 |
tgattatgatttttgtttttt-cagtcctgtatttacacacatggctggaagttcttcggtgtggaaggccctatcacctagagttctgcagactgcttt |
8985369 |
T |
|
| Q |
188 |
caatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaat |
274 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8985368 |
caatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaat |
8985282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 8986077 - 8986042
Alignment:
| Q |
15 |
atcactacccctaagtgagtttttcttaccttttaa |
50 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
8986077 |
atcactacccctaagtgagtttttcttaacttttaa |
8986042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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