View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_high_10 (Length: 414)
Name: NF18999_high_10
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_high_10 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 25802400 - 25802018
Alignment:
| Q |
20 |
aaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802400 |
aaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcac |
25802301 |
T |
|
| Q |
120 |
gtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtg |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802300 |
gtccttttcgcatgcgttgcaataacgcagcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtg |
25802201 |
T |
|
| Q |
220 |
gaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802200 |
gaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaa |
25802101 |
T |
|
| Q |
320 |
attcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcatctc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25802100 |
attcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctc |
25802018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 58 - 402
Target Start/End: Complemental strand, 25816430 - 25816111
Alignment:
| Q |
58 |
ttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttc |
157 |
Q |
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| T |
25816430 |
ttcgcgcaacatgggtggaggtcaaatccacatgatttgcagtggtatacaaacccgttcacgtc---------------gcagtaacgcggcgtgtttc |
25816346 |
T |
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| Q |
158 |
ctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgca |
257 |
Q |
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||||||| || | ||||||||||||||||| || | ||||||||||||||| |||||||||| |||||||||||||||||| | ||| || |
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| T |
25816345 |
ctggtgggtttgg----------aaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattgtcaca |
25816256 |
T |
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| Q |
258 |
gatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtgg |
357 |
Q |
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| T |
25816255 |
aatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtgg |
25816156 |
T |
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| Q |
358 |
ctgaaatgggatatctcactgtatttcattgttctgtttcatctc |
402 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| |||| |
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| T |
25816155 |
ctgaaatgtgatatctcgttgtatttcattgttctgtttcttctc |
25816111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 112131 - 112507
Alignment:
| Q |
20 |
aaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcac |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112131 |
aaagtttcatttccccgtcgttaagaaccatcggcagctttgcgcaacacgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcac |
112230 |
T |
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| Q |
120 |
gtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtg |
219 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
112231 |
atccttttcgcatgcgttgcagtaatgcggcgtgtttcctggtgggatttgcatgaattggaaggtgcattttgtgtaaaatggatcgaagagtgtggtg |
112330 |
T |
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| Q |
220 |
gaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaa |
319 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
112331 |
gaaggtattgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgtgaatcgatgcctatttctttgcagccatcgcatttgaatggaa |
112430 |
T |
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| Q |
320 |
attcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgttt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
112431 |
attcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgttctgttt |
112507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 381
Target Start/End: Complemental strand, 12530663 - 12530521
Alignment:
| Q |
239 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
338 |
Q |
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||||||| || ||||| || ||| |||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||| ||| | ||| | |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgt |
12530564 |
T |
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| Q |
339 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
381 |
Q |
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|||||| |||||| | ||||| ||||| ||||||||| ||||| |
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| T |
12530563 |
tagtttatgtttttgatggctaaaatgagatatctcattgtat |
12530521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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