View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18999_high_13 (Length: 375)

Name: NF18999_high_13
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18999_high_13
NF18999_high_13
[»] chr8 (2 HSPs)
chr8 (48-272)||(6827278-6827501)
chr8 (298-366)||(6827204-6827272)
[»] chr6 (2 HSPs)
chr6 (48-272)||(9822643-9822866)
chr6 (298-366)||(9822872-9822940)
[»] chr1 (2 HSPs)
chr1 (47-299)||(8457838-8458089)
chr1 (298-366)||(8458171-8458238)
[»] chr2 (3 HSPs)
chr2 (19-116)||(18361356-18361453)
chr2 (303-366)||(18361200-18361263)
chr2 (189-271)||(18361265-18361345)
[»] chr3 (2 HSPs)
chr3 (49-132)||(27964061-27964144)
chr3 (336-366)||(27964018-27964048)
[»] chr7 (1 HSPs)
chr7 (298-366)||(25802634-25802702)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 6827501 - 6827278
Alignment:
Q  48 aaataaatgaatacttttttgttactaagtatgtgaatatattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactctttg 147  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6827501 aaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactttttg 6827402  T
Q  148 cagatagccataggcaacgaataattaattggattgat---agtggacaacattcaactgcatttgacttcacagccaagggaattctccaggtatatat 244  Q
    ||||||||||||||||||||||||| || |||||||||   |||||||| | |||||||| ||||||||||||| ||||||||||||||||||    ||     
T  6827401 cagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaactggatttgacttcacaaccaagggaattctccagg----tac 6827306  T
Q  245 ccagcattttgtcctaagtatgttaaat 272  Q
    | | ||||||||||||||||||||||||    
T  6827305 ctaacattttgtcctaagtatgttaaat 6827278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 6827272 - 6827204
Alignment:
Q  298 gtattgaattcattttctcttgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg 366  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6827272 gtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctg 6827204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 48 - 272
Target Start/End: Original strand, 9822643 - 9822866
Alignment:
Q  48 aaataaatgaatacttttttgttactaagtatgtgaatatattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactctttg 147  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9822643 aaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactttttg 9822742  T
Q  148 cagatagccataggcaacgaataattaattggattgat---agtggacaacattcaactgcatttgacttcacagccaagggaattctccaggtatatat 244  Q
    ||||||||||||||||||||||||| || |||||||||   |||||||| | |||||||| ||||||||||||| ||||||||||||||||||    ||     
T  9822743 cagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaactggatttgacttcacaaccaagggaattctccagg----tac 9822838  T
Q  245 ccagcattttgtcctaagtatgttaaat 272  Q
    | | ||||||||||||||||||||||||    
T  9822839 ctaacattttgtcctaagtatgttaaat 9822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 9822872 - 9822940
Alignment:
Q  298 gtattgaattcattttctcttgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg 366  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9822872 gtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctg 9822940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 47 - 299
Target Start/End: Original strand, 8457838 - 8458089
Alignment:
Q  47 caaataaatgaatacttttttgttactaagtatgtgaatatattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactcttt 146  Q
    |||||||||||||||||||| |||||||||||| |||||| |||  |||||||||| ||||||| |||| |||||| ||||| |||||||||||||||||    
T  8457838 caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttttactcttt 8457937  T
Q  147 gcagatagccataggcaacgaataattaattggattgatag---tggacaacattcaactgcatttgacttcacagccaagggaattctccaggtatata 243  Q
    ||||||| |||||| ||||||||||| |||||||||||| |   |||||| | |||||||||||||||||||||| | ||||||||||||||||||        
T  8457938 gcagataaccatagacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacgaagggaattctccaggtac--- 8458034  T
Q  244 tccagcattttgtcctaagtatgttaaatgaagttttgaaaactaagcattgcagt 299  Q
     ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8458035 -ccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagt 8458089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 8458171 - 8458238
Alignment:
Q  298 gtattgaattcattttctcttgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg 366  Q
    |||||||||||||||| || |||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  8458171 gtattgaattcattttttcatgttaccattatttgtaggaa-gctgtcaagagagaattttggcgtctg 8458238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 18361453 - 18361356
Alignment:
Q  19 tgtagtaggattgaaagttttaacattgcaaataaatgaatacttttttgttactaagtatgtgaatatattaccctttcaatacttcttttgcattg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  18361453 tgtagtaggattgaaagttttaacattgcaaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttcttttggattg 18361356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 18361263 - 18361200
Alignment:
Q  303 gaattcattttctcttgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg 366  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  18361263 gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctg 18361200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 18361345 - 18361265
Alignment:
Q  189 ggacaacattcaactgcatttgacttcacagccaagggaat--tctccaggtatatatccagcattttgtcctaagtatgttaaa 271  Q
    ||||||| ||||||||||| |||||||||||||||||||||  ||||||||||     ||||||||||||| |||||||||||||    
T  18361345 ggacaactttcaactgcatatgacttcacagccaagggaatgatctccaggtac----ccagcattttgtcttaagtatgttaaa 18361265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 27964144 - 27964061
Alignment:
Q  49 aataaatgaatacttttttgttactaagtatgtgaatatattaccctttcaatacttcttttgcattgtacacttagctcactt 132  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27964144 aataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcactt 27964061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 366
Target Start/End: Complemental strand, 27964048 - 27964018
Alignment:
Q  336 gaattctgtcaagatagaattttggcgtctg 366  Q
    |||||||||||||||||||||||||||||||    
T  27964048 gaattctgtcaagatagaattttggcgtctg 27964018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 25802702 - 25802634
Alignment:
Q  298 gtattgaattcattttctcttgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg 366  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25802702 gtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg 25802634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University