View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_high_2 (Length: 607)
Name: NF18999_high_2
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 14336364 - 14336940
Alignment:
| Q |
1 |
cgaggtgtaggaggcatagatccattgccattgccatagccgatgctgttgccatttgcacgataaccgtttgtctttctaaagctgttagnnnnnnnng |
100 |
Q |
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| T |
14336364 |
cgaggtgtaggaggcatagatccattgccattgccatagccgatgctgttgccatttgcacgataaccgtttgtctttctaaagctgttagttttttttg |
14336463 |
T |
|
| Q |
101 |
gactaggtttagacccatatatggcttccttttgatttaggagtagatcttgcatcttcttttggtcctgtgagattaaaaacagaaaaccagaagtgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14336464 |
gactaggtttagacccatatatggcttccttttgatttaggagtagatcttgcatcttcttttggtcctatgagattaaaaacagaaaaccagaagtgga |
14336563 |
T |
|
| Q |
201 |
ttatttacaatagtaattaatttagaccaatgcataattaattctatatcttttatcttctcttttactacctctaatagggttaagatagccatcatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14336564 |
ttatttacaatagtaattaatttagaccaatgcataattaattctatatcttttatcttctcttttactacctctagtagggttaagatagccatcatat |
14336663 |
T |
|
| Q |
301 |
taaatgttctacaccaacttacacaggaaataaattaagggtacaaaaggaatttaattttagtaattaatgctgctttaaatttgtgactttttcttac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14336664 |
taaatgttctacaccaacttacacaggaaataaattaagggtacaaaaggaatttaattttagtcattaatgctgctttaaatttgtgactttttcttac |
14336763 |
T |
|
| Q |
401 |
aaataggacc-aaaatttcttctgtcagacaaaagggagtaataaaatacacataagcaggtcatttgttattaactaaacttactaggcatattcaaag |
499 |
Q |
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| T |
14336764 |
aaataggaccaaaaatttcttctgtcagaccaaagggagtaataaaatacacataagcaggtcatttgttattaactaaacttactaggcatattcaaag |
14336863 |
T |
|
| Q |
500 |
tacaaagatcaatttgaggacaaacaacaaatgattataggaaaatatgggtaaaaaggtaaatttaccctctgtcg |
576 |
Q |
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| T |
14336864 |
tacaaagatcaatttgaggacaaacaacaaatgattataggaaaatatgggtaaaaaggtaaatttaccctctgtcg |
14336940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 413
Target Start/End: Complemental strand, 32715719 - 32715686
Alignment:
| Q |
380 |
aaatttgtgactttttcttacaaataggaccaaa |
413 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
32715719 |
aaatttgtgactttttcttataaataggaccaaa |
32715686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 23010718 - 23010684
Alignment:
| Q |
380 |
aaatttgtgactttttcttacaaataggaccaaaa |
414 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
23010718 |
aaatttgtgactttttcttataaataggaccaaaa |
23010684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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