View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18999_high_24 (Length: 251)

Name: NF18999_high_24
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18999_high_24
NF18999_high_24
[»] chr2 (25 HSPs)
chr2 (1-231)||(19073506-19073736)
chr2 (1-201)||(41644020-41644227)
chr2 (1-208)||(6177923-6178135)
chr2 (1-199)||(41713310-41713513)
chr2 (69-208)||(19093676-19093815)
chr2 (4-209)||(39788297-39788507)
chr2 (5-212)||(18947293-18947506)
chr2 (1-224)||(18779078-18779299)
chr2 (59-202)||(34441573-34441716)
chr2 (1-191)||(18059066-18059262)
chr2 (1-167)||(15650996-15651168)
chr2 (3-118)||(27138798-27138919)
chr2 (69-208)||(7565511-7565652)
chr2 (1-51)||(34441773-34441823)
chr2 (64-212)||(18514415-18514563)
chr2 (69-201)||(32652621-32652753)
chr2 (69-125)||(17244840-17244896)
chr2 (1-125)||(42005534-42005664)
chr2 (77-132)||(38249901-38249956)
chr2 (69-203)||(59395-59529)
chr2 (69-114)||(40912471-40912516)
chr2 (69-203)||(6357043-6357177)
chr2 (1-35)||(38250000-38250034)
chr2 (69-114)||(43445342-43445387)
chr2 (3-39)||(32651987-32652023)
[»] chr3 (25 HSPs)
chr3 (1-224)||(32180422-32180651)
chr3 (1-212)||(26000680-26000897)
chr3 (3-212)||(19606596-19606812)
chr3 (1-210)||(38392313-38392528)
chr3 (75-203)||(42664014-42664142)
chr3 (4-210)||(49359313-49359525)
chr3 (1-208)||(7568413-7568619)
chr3 (1-191)||(45879191-45879387)
chr3 (1-212)||(51878262-51878474)
chr3 (1-212)||(47930348-47930567)
chr3 (4-208)||(40640317-40640528)
chr3 (1-224)||(7758106-7758323)
chr3 (69-203)||(5125442-5125575)
chr3 (69-208)||(48154374-48154513)
chr3 (1-118)||(44880938-44881061)
chr3 (69-203)||(29923057-29923191)
chr3 (69-203)||(29972210-29972344)
chr3 (69-179)||(36689674-36689784)
chr3 (69-217)||(11019700-11019847)
chr3 (147-208)||(31706507-31706568)
chr3 (69-131)||(12121217-12121279)
chr3 (72-134)||(40744200-40744262)
chr3 (69-187)||(47871210-47871328)
chr3 (174-207)||(23165310-23165343)
chr3 (3-39)||(48155075-48155111)
[»] chr7 (13 HSPs)
chr7 (1-217)||(49002372-49002594)
chr7 (1-173)||(5781664-5781841)
chr7 (1-212)||(4902468-4902685)
chr7 (1-210)||(4618440-4618655)
chr7 (1-210)||(22954998-22955212)
chr7 (2-200)||(37853990-37854195)
chr7 (1-208)||(23402059-23402271)
chr7 (1-164)||(8133290-8133459)
chr7 (69-208)||(25470643-25470782)
chr7 (1-230)||(7743067-7743313)
chr7 (9-125)||(40382045-40382167)
chr7 (69-203)||(8759459-8759592)
chr7 (69-224)||(10674928-10675085)
[»] chr8 (11 HSPs)
chr8 (1-212)||(3038554-3038770)
chr8 (1-210)||(23176472-23176686)
chr8 (1-208)||(4108602-4108814)
chr8 (1-210)||(7290867-7291082)
chr8 (69-212)||(18756350-18756493)
chr8 (59-217)||(28220711-28220869)
chr8 (64-203)||(34685992-34686131)
chr8 (1-121)||(6267279-6267405)
chr8 (61-207)||(30650923-30651078)
chr8 (69-118)||(1872689-1872738)
chr8 (174-207)||(5018554-5018587)
[»] chr5 (23 HSPs)
chr5 (1-212)||(22616641-22616855)
chr5 (1-201)||(36055569-36055774)
chr5 (71-217)||(12080412-12080558)
chr5 (1-224)||(33163663-33163890)
chr5 (1-185)||(41417289-41417479)
chr5 (6-210)||(31878536-31878747)
chr5 (69-212)||(27579248-27579391)
chr5 (1-211)||(21320899-21321114)
chr5 (69-199)||(29766498-29766628)
chr5 (87-203)||(25654589-25654704)
chr5 (69-212)||(33848030-33848173)
chr5 (69-208)||(8762883-8763022)
chr5 (69-208)||(13888329-13888468)
chr5 (1-203)||(10237562-10237768)
chr5 (69-191)||(13381123-13381245)
chr5 (69-207)||(10053820-10053952)
chr5 (69-203)||(26412052-26412186)
chr5 (78-191)||(3014672-3014785)
chr5 (69-191)||(33752412-33752534)
chr5 (69-189)||(12164016-12164136)
chr5 (1-39)||(13380647-13380685)
chr5 (1-39)||(13887389-13887427)
chr5 (1-39)||(25521705-25521743)
[»] chr1 (19 HSPs)
chr1 (6-191)||(15964253-15964444)
chr1 (69-212)||(16135545-16135688)
chr1 (1-203)||(13876611-13876819)
chr1 (12-224)||(16127677-16127893)
chr1 (1-224)||(27118478-27118703)
chr1 (61-203)||(47554968-47555111)
chr1 (1-171)||(10758024-10758200)
chr1 (7-125)||(31804854-31804978)
chr1 (69-209)||(3120548-3120688)
chr1 (18-224)||(25943363-25943573)
chr1 (69-203)||(422205-422339)
chr1 (1-51)||(16132623-16132673)
chr1 (89-201)||(5500596-5500707)
chr1 (69-200)||(28012925-28013056)
chr1 (1-39)||(21263907-21263945)
chr1 (2-39)||(421542-421579)
chr1 (162-203)||(4146712-4146753)
chr1 (174-207)||(42663251-42663284)
chr1 (161-217)||(26970835-26970891)
[»] chr4 (15 HSPs)
chr4 (1-212)||(17612482-17612699)
chr4 (1-212)||(2570626-2570843)
chr4 (69-208)||(9743812-9743948)
chr4 (18-191)||(2266561-2266739)
chr4 (1-171)||(2708021-2708196)
chr4 (69-208)||(5914957-5915096)
chr4 (64-166)||(49878892-49878993)
chr4 (69-203)||(14246414-14246548)
chr4 (1-51)||(54995649-54995699)
chr4 (73-125)||(54995016-54995068)
chr4 (89-156)||(1012529-1012596)
chr4 (1-45)||(1012444-1012489)
chr4 (69-125)||(28292430-28292486)
chr4 (3-39)||(5915657-5915693)
chr4 (144-212)||(9409522-9409589)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-200)||(5738-5941)
[»] chr6 (11 HSPs)
chr6 (69-212)||(4104238-4104381)
chr6 (1-208)||(11083845-11084054)
chr6 (1-208)||(26301609-26301825)
chr6 (1-191)||(34993979-34994175)
chr6 (69-208)||(4487743-4487882)
chr6 (69-208)||(25441709-25441848)
chr6 (92-214)||(30341461-30341583)
chr6 (69-203)||(18306573-18306707)
chr6 (96-210)||(19631996-19632112)
chr6 (69-212)||(6613676-6613819)
chr6 (1-50)||(30341172-30341221)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-203)||(24510-24717)
[»] scaffold0312 (2 HSPs)
scaffold0312 (69-203)||(8233-8367)
scaffold0312 (2-39)||(8993-9030)
[»] scaffold0262 (1 HSPs)
scaffold0262 (73-125)||(11443-11495)
[»] scaffold0001 (1 HSPs)
scaffold0001 (69-125)||(65992-66048)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 19073506 - 19073736
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaattcctttaatattttgtatgagaactgatttgtaata 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  19073506 tattgaaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaattcctttaatattttatacgaggactgatttgtaata 19073605  T
Q  101 aggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaaaag 200  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  19073606 aggtaaaatttagttttaaagtggttcaccagcaggacactgactgacatgacatcaacaattatactattgactaaataaaataacttttacaaaaaag 19073705  T
Q  201 tcaattttctgattacaacgtagaggtctcg 231  Q
    |||||||||||||| ||||||||||||||||    
T  19073706 tcaattttctgattgcaacgtagaggtctcg 19073736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41644020 - 41644227
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatatttt-gtatgagaactgat 92  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||||||||| | |||||      ||||||||  |||||||||| ||||||| ||||||    
T  41644020 tattgcaattgtatccctgattaaatcaaaattaaacatagtttctcatttgt-gcactaagattgaaattccccttaatatttttgtatgaggactgat 41644118  T
Q  93 ttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttg 192  Q
    ||||||||||||| | |||||||||| |||||| |||||| | |||||| |||||||||||||| ||||||||| |||||  |||| ||||||  ||||     
T  41644119 ttgtaataaggtagagtttagttttagagtggtccaccagcatgacactagctgacatgacatcaacaattatattattggctaaacaaaatatattttt 41644218  T
Q  193 caaaaaagt 201  Q
    |||||||||    
T  41644219 caaaaaagt 41644227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 6177923 - 6178135
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||| | |||||      |||||| || ||||||||||||| ||  |||||||    
T  6177923 tattccaattgtgtccctgattaaatcaaaat-aaacatagattctcatttgt-gcactaagattgaaatttcccttaatattttgtacgatgactgatt 6178020  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| ||||||| || |||||| |||||  | |||||| ||||||||||||||| || |||||||||||  |||| ||||||||||||      
T  6178021 tgtaataaggtaaagtttagttctagagtggtccaccaacatgacactagctgacatgacatcggcagttatactattggctaaacaaaataacttttct 6178120  T
Q  194 aaaaaagtcaatttt 208  Q
    |||||||||| ||||    
T  6178121 aaaaaagtcagtttt 6178135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 41713310 - 41713513
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||||| || | |||||      ||||||||  | ||||||||| |||| ||||||||    
T  41713310 tattacaattgtttccctaattaaatcaaaattaaacatagattctcacttgt-gcactaaaaatgaaattccccttatattttgtgtgaggactgattt 41713408  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    |||||||| ||||| ||||||||| |||||| |||||  | |||||| |||||||||| || || |||||||||||||| |||| |||||||||||| ||    
T  41713409 gtaataagataaaacttagttttagagtggtccaccaacatgacactagctgacatgatattgataattatactattgactaaacaaaataactttttca 41713508  T
Q  195 aaaaa 199  Q
    |||||    
T  41713509 aaaaa 41713513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 19093676 - 19093815
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||| | |||  |||||||| | ||| || ||||| |||||||||||    
T  19093676 ttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcctccaacaagacactagttgagataacatcaacaattatact 19093775  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||||||||| ||| ||||||||  |||||||||||||||    
T  19093776 attgattaaacaaattaacttttttaaaaaagtcaatttt 19093815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 39788507 - 39788297
Alignment:
Q  4 tgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaatt-------cctttaatattttgtatgagaactgatttgt 96  Q
    ||||||| |||| ||| |||||||||| ||||||||||||||| |||| | ||||| |||||       || ||||||||| ||||||||||||||||||    
T  39788507 tgcaattatgtctctggttaaatcaaaattaaacatagattctgatttgt-gcactaaaattgaaattccccttaatatttcgtatgagaactgatttgt 39788409  T
Q  97 aataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaa 196  Q
    ||||||||||| |||| ||||| |||||| |||||| | |||||    |||||||||||||||| |||||||||||| |||| ||||| |||||| ||||    
T  39788408 aataaggtaaagtttatttttagagtggtccaccagcaggacaccaattgacatgacatcgacagttatactattgactaaacaaaat-actttttcaaa 39788310  T
Q  197 aaagtcaattttc 209  Q
    ||| ||| |||||    
T  39788309 aaaatcagttttc 39788297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 18947506 - 18947293
Alignment:
Q  5 gcaattgtgtccctgattaaatcaaagttaaacatagattctcattt-----tttgcactgaaattcct-ttaatattttgtatgagaactgatttgtaa 98  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||     ||   | |||||||||  ||||||||||||||||| ||||||||||||    
T  18947506 gcaattgtgtccctgattaaatcaaaagtaaacatagattctcatttgtgcattaagattgaaattccccttaatattttgtatgaggactgatttgtaa 18947407  T
Q  99 taaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaaa 198  Q
    ||||||||| |||||||||| |||||| |||||| | |||||| |||  ||||| || | |  ||||||||| || |||| ||||||| ||||   ||||    
T  18947406 taaggtaaagtttagttttagagtggtacaccagcaggacactagctagcatgatattggccgttatactatcgactaaacaaaataatttttctgaaaa 18947307  T
Q  199 agtcaattttctga 212  Q
    ||||| ||||||||    
T  18947306 agtcagttttctga 18947293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18779299 - 18779078
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaattcctttaatat--tttgtatgagaactgatttgtaa 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| | |||     ||| |  ||| |||||  ||||||||||||    
T  18779299 tattgcaattgtgttcctgattaaatcaaagttaaacatagattctcatttgt-gcactaagattga---aatttcctttatatgacgactgatttgtaa 18779204  T
Q  99 taaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaaa 198  Q
    ||||||||| |||||||||| |||| |   |||||| |||||| ||| |||||||||||  | |||||||||||| |||| |||||||||||| ||||||    
T  18779203 taaggtaaagtttagttttagagtgatcatccagtaggacactagcttacatgacatcggtagttatactattgactaaacaaaataacttttccaaaaa 18779104  T
Q  199 agtcaattttctgattacaacgtaga 224  Q
    | | | |||||| | |||| ||||||    
T  18779103 aatgagttttctaactacatcgtaga 18779078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 34441716 - 34441573
Alignment:
Q  59 tgaaattcctttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcga 158  Q
    |||||||||  | |||||||||||||| |||||||||||||||| ||||  |||||||||||||| | |||||  | |||||| |||||||||| | ||     
T  34441716 tgaaattccccttatattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccaccaacatgacactagctgacatgataacgg 34441617  T
Q  159 caattatactattgattaaataaaataacttttgcaaaaaagtc 202  Q
    |||||||||||||||  |||||||||||||||| ||||||||||    
T  34441616 caattatactattgaccaaataaaataactttttcaaaaaagtc 34441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 18059262 - 18059066
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||| |||||| || ||| ||||| |||||||||| ||| | |||||      ||||||||  ||||||||||||||||  |||||||    
T  18059262 tattgcaattgtgtccttgattagattaaaattaaatatagattctcgtttgt-gcactaagattgaaattccccttaatattttgtatgatgactgatt 18059164  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataactttt 191  Q
    ||||| |||||||| |||||||||| ||||||  |  || |  ||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  18059163 tgtaacaaggtaaagtttagttttagagtggtctattagcagcacactagctaacatgacatcgacaattatactattgactaaacaaaataactttt 18059066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15650996 - 15651168
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattc-ctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |||||||| | |||||      ||||||| | | ||||||||||||||| |||||||    
T  15650996 tattgcaattgtgttcctgattaaatcaaaattaaacatagaatctcatttgt-gcactaaaattgaaattctcctaaatattttgtatgaggactgatt 15651094  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatac 167  Q
    |||||||| ||||| |||| ||||| |||||| |||| ||| |||| | | ||||||||||||| || ||||||    
T  15651095 tgtaataaagtaaagtttaattttagagtggtccaccggtaggacattagatgacatgacatcggcagttatac 15651168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 27138919 - 27138798
Alignment:
Q  3 ttgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaattc-ctttaatattttgtatgagaactgatttg 95  Q
    |||||||||||||||||||||||||||| |||||||||||||| || ||| |||||      |||||||| | ||||||||||| ||||| ||| |||||    
T  27138919 ttgcaattgtgtccctgattaaatcaaaattaaacatagattccca-tttgtgcactaagattgaaattcaccttaatattttgcatgaggacttatttg 27138821  T
Q  96 taataaggtaaaatttagtttta 118  Q
    ||||||||||||||||| |||||    
T  27138820 taataaggtaaaatttaatttta 27138798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 7565511 - 7565652
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataagg--taaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattata 166  Q
    ||||||||||||||||| |||||||||||||||    ||||||||||| ||| |||||| || ||  |||||||| ||||||||| |||  |||| |||     
T  7565511 ttaatattttgtatgaggactgatttgtaataaaaaataaaatttagtgttacagtggtccatcacaaagacactagctgacatggcatgaacaactatg 7565610  T
Q  167 ctattgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||||| ||||| ||||| ||||||  |||||||||| ||||    
T  7565611 ctattggttaaacaaaatgacttttttaaaaaagtcattttt 7565652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34441823 - 34441773
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattt 51  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34441823 tattgcaattgtgtccctgattaaatcaaaattaaacatagattctcattt 34441773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 18514563 - 18514415
Alignment:
Q  64 ttcctttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaatt 163  Q
    |||| ||||||||||||||||  | |||||| |||||| ||||| || ||| ||| |||||| |||||| | |||||| | |||||||||||  ||| ||    
T  18514563 ttccattaatattttgtatgatgattgatttataataaagtaaagttcagtcttatagtggtccaccagcacgacactagttgacatgacattaacagtt 18514464  T
Q  164 atactattgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    ||||||||   |||| |||||||||||| ||||||| ||| ||| ||||    
T  18514463 atactattagctaaacaaaataactttttcaaaaaattcagtttcctga 18514415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 32652621 - 32652753
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| | | | ||||||  | ||  |||||||| ||||||||| |||  |||| ||| ||    
T  32652621 ttaatattttgtatgaggactgatttgtaataaagtaaaatttaatgtcatagtggtctatcacaaagacactagctgacatggcatgaacaactatgct 32652720  T
Q  169 attgattaaataaaataacttttgcaaaaaagt 201  Q
    |||| ||||| ||||| ||||||  ||||||||    
T  32652721 attggttaaacaaaatgacttttttaaaaaagt 32652753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 17244896 - 17244840
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggt 125  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||    
T  17244896 ttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggt 17244840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 42005534 - 42005664
Alignment:
Q  1 tattgcaattgtgtccc-tgattaaatcaaagttaaacatagattctcattttttgcac------tgaaattcctttaatattttgtatgagaactgatt 93  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||      |||||||    | ||||||||||||||| ||||||    
T  42005534 tattgtaattgtgtcccctgattaaatcaaaattaaacatagattctca-tttgtgcactaagattgaaattttccttatattttgtatgagagctgatt 42005632  T
Q  94 tgtaataaggtaaaatttagttttaaagtggt 125  Q
    ||||||||  ||||| ||| ||||||||||||    
T  42005633 tgtaataaaataaaacttaattttaaagtggt 42005664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 38249956 - 38249901
Alignment:
Q  77 ttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccag 132  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||    
T  38249956 ttgtatgaggactgatttgtaacaaggtaaaatttagttttagagtggtccaccag 38249901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 59395 - 59529
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||  |||||||| ||||||| ||||||||||| |||   |||| || ||  ||| || | ||||||||| |||| | |||||| |     
T  59395 ttaatattttgtacgatgactgatttataataagataaaatttagtcttacgttggtccatcaagaagccattagctgacatggcatcaataattatgca 59494  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    ||||  ||||||||||||||||| |||||||||||    
T  59495 attggctaaataaaataactttttcaaaaaagtca 59529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 40912516 - 40912471
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagt 114  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  40912516 ttaatattttgtatgaggactgatttgtaataaagtaaaatttagt 40912471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 6357043 - 6357177
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||   || ||| |||| |||||| |||||||||||| ||| |||||| || ||  ||||||   ||||||||| |||  | |||||| ||    
T  6357043 ttaatattttgttcaaggacttatttataataaagtaaaatttagtcttatagtggtccatcacaaagacatcagctgacatggcattaagaattatgct 6357142  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    ||||  ||||| |||| |||||| |||||||||||    
T  6357143 attggctaaattaaatgactttttcaaaaaagtca 6357177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38250034 - 38250000
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  38250034 tattgcaattgtgtccctgattaaatcaaaattaa 38250000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 43445387 - 43445342
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagt 114  Q
    |||||||||||||| || ||| ||||||||||| ||||||||||||    
T  43445387 ttaatattttgtataaggactaatttgtaataaagtaaaatttagt 43445342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 32651987 - 32652023
Alignment:
Q  3 ttgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  32651987 ttgcaattgtgtccttgattaaatcaaaattaaacat 32652023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32180651 - 32180422
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||| | |||||      ||||||||  ||||||||||||||||| |||||||    
T  32180651 tattgcaattgtgtccctgattaaatcaaaattaaacatagatttccatttgt-gcactaagattgaaattccccttaatattttgtatgaggactgatt 32180553  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| |||||||||| |||||| |||||| | |||||| || |||||||||||  || |||||||||||  |||| |||||||||||| |    
T  32180552 tgtaataaggtaaagtttagttttagagtggtccaccagcaggacactagccgacatgacatcagcagttatactattggctaaacaaaataacttttcc 32180453  T
Q  194 aaaaaagtcaattttctgattacaacgtaga 224  Q
    ||| ||||||||||||||| |||| ||||||    
T  32180452 aaagaagtcaattttctgactacatcgtaga 32180422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 26000680 - 26000897
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaatt-------cctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||| | ||||| |||||       || ||||||||||||||||| |||||||    
T  26000680 tattgcaattgtgtcattgattaaatcaaaattaaacatagattctcatttgt-gcactaaaattgaaatttcccttaatattttgtatgagtactgatt 26000778  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||| ||||| |||||||||| ||||||  | ||||| || | | |||||||||| ||||||| |||||||||||||| || |||||||||||| |    
T  26000779 tgtaataaagtaaagtttagttttagagtggtctatcagtaggatagtagctgacatgatatcgacagttatactattgattcaacaaaataacttttac 26000878  T
Q  194 aaaaaagtcaattttctga 212  Q
    |||||| |||| |||||||    
T  26000879 aaaaaattcaaatttctga 26000897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 19606812 - 19606596
Alignment:
Q  3 ttgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaattcct-ttaatattttgtatgagaactgatttg 95  Q
    ||||||| |||||||| ||||||||||| |||||||||||||  ||||| | ||||      |||||||||  ||||||||||||||||| |||||||||    
T  19606812 ttgcaatcgtgtcccttattaaatcaaaattaaacatagatttccatttgt-gcaccaagattgaaattccccttaatattttgtatgaggactgatttg 19606714  T
Q  96 taataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc-a 194  Q
    |||||||||||| |||||||||| |||||| ||| || | |||||| ||||||||||||||| |  | |||||||||| |||| |||||||||||| | |    
T  19606713 taataaggtaaagtttagttttagagtggtccacgagcaggacactagctgacatgacatcggcggtaatactattgactaaacaaaataactttttcaa 19606614  T
Q  195 aaaaagtcaattttctga 212  Q
    |||||| |||||||||||    
T  19606613 aaaaagccaattttctga 19606596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 38392528 - 38392313
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||      |||||| || ||||||||||||| ||  |||||||    
T  38392528 tattgcaattgtgtccctgattaaatcaaaattaaacatagattttcatttat-gcactaagattgaaatttcccttaatattttgtaagatgactgatt 38392430  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||| |||||||||||||||| |  |||||||||  | |||||| ||||| |||| |||  || ||||| |||||  |||| ||||||||||||      
T  38392429 tgtaataatgtaaaatttagttttagaacggttcaccaacatgacactagctgatatgatatcagcagttatattattggctaaacaaaataacttttct 38392330  T
Q  194 aaaaaagtcaattttct 210  Q
    |||||||||||||||||    
T  38392329 aaaaaagtcaattttct 38392313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 42664142 - 42664014
Alignment:
Q  75 ttttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgat 174  Q
    ||||||| ||| ||||||||||||||| |||||||||||| ||| ||||||| | ||  |||||||| |||||||||||||| |||| |||||||||||     
T  42664142 ttttgtacgaggactgatttgtaataaagtaaaatttagtcttacagtggtttatcacaaagacactagctgacatgacatcaacaactatactattgac 42664043  T
Q  175 taaataaaataacttttgcaaaaaagtca 203  Q
    ||||||||||||||||| | |||||||||    
T  42664042 taaataaaataactttttctaaaaagtca 42664014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 49359525 - 49359313
Alignment:
Q  4 tgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcc-tttaatattttgtatgagaactgatttgt 96  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||      |||||||| |||||||||||||||||| |||||||| |    
T  49359525 tgcaattgtgtccctgattaaatcaaaattaaacatagatt-tctatttgtgcactaagattgaaattccctttaatattttgtatgaggactgatttat 49359427  T
Q  97 aataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataac-ttttgcaa 195  Q
    ||||||||||| ||||| |||| | ||||  |||| || |||||| |||||||||||||||    |||||||| ||  |||| |||||||| |||| |||    
T  49359426 aataaggtaaagtttag-tttagattggtctaccactaggacactagctgacatgacatcggttgttatactaatggctaaacaaaataacttttttcaa 49359328  T
Q  196 aaaagtcaattttct 210  Q
    |||||||||||||||    
T  49359327 aaaagtcaattttct 49359313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7568619 - 7568413
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||||| | |||||      ||||||||  ||||||||||||||||| |||||||    
T  7568619 tattacaattgtgtctctgattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattccccttaatattttgtatgaggactgatt 7568521  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||       || |||||||||| |||||| |||||| |  ||||| |||||||| | ||||||| |||||||||||| |||| |||||||||||| |    
T  7568520 tgtaa-------aagtttagttttagagtggtccaccagcagaacactagctgacataaaatcgacagttatactattgactaaacaaaataactttttc 7568428  T
Q  194 aaaaaagtcaatttt 208  Q
    ||||| |||| ||||    
T  7568427 aaaaatgtcagtttt 7568413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 45879387 - 45879191
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    ||||| |||||| | ||||||||||||||| |||||||||||||||||||| | |||||      ||||||||  || |||||||||||||| |||||||    
T  45879387 tattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgt-gcactaacattgaaattcccctttatattttgtatgaggactgatt 45879289  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaatta---tactattgattaaataaaataacttt 190  Q
    |||||||||||||| ||||| ||||||||||| ||||||   |||||| ||||||||||||||  ||||||   ||||||||  |||| |||||||||||    
T  45879288 tgtaataaggtaaagtttagctttaaagtggtccaccag---gacactagctgacatgacatcagcaattatattactattggctaaacaaaataacttt 45879192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 51878262 - 51878474
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    ||||||||||||||| | |||||||| ||| |||||||||||||||||||| | |||||      |||||||  ||||||||||||||||| ||||| ||    
T  51878262 tattgcaattgtgtctccgattaaataaaaattaaacatagattctcatttat-gcactaagattgaaattctcttaatattttgtatgagtactgaatt 51878360  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    ||||||||||||| |||| ||||| ||||   |||||||   ||| | ||||||||||||||| |||| |||||||| | ||||  |||||||||||  |    
T  51878361 gtaataaggtaaagtttaattttagagtgacccaccagt---acagtagctgacatgacatcggcaatcatactattaactaaactaaataactttttga 51878457  T
Q  195 aaaaagtcaattttctga 212  Q
    ||||| ||||||||||||    
T  51878458 aaaaa-tcaattttctga 51878474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 47930567 - 47930348
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||||      ||||||||  |||||||||||||| |  |||||||    
T  47930567 tattgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattccccttaatattttgtataatgactgatt 47930469  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataa--ctttt 191  Q
    |||||||| |||||  ||||||||| |||||| ||| |  | ||||||  |||| ||||||||| || ||||||||||   |||| |||||||   ||||    
T  47930468 tgtaataaagtaaagcttagttttagagtggtccactaacaggacactaactgatatgacatcggcagttatactattagctaaacaaaataattttttt 47930369  T
Q  192 gcaaaaaagtcaattttctga 212  Q
     ||||||||||||||||||||    
T  47930368 tcaaaaaagtcaattttctga 47930348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 40640528 - 40640317
Alignment:
Q  4 tgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattc-ctttaatattttgtatgagaactgatttgt 96  Q
    ||||||||||||| ||||||||||||| ||||| ||| |||||||||| | |||||      ||||||| | ||||||||||||||||| ||||||||||    
T  40640528 tgcaattgtgtccttgattaaatcaaaattaaagatatattctcatttgt-gcactaaaattgaaattctccttaatattttgtatgaggactgatttgt 40640430  T
Q  97 aataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc-aa 195  Q
    |||||  |||| |||||||||| |||| |  ||||| | | |||  | ||||||||||| | || |||||||||||| |||| |||||||||||| | ||    
T  40640429 aataaaataaagtttagttttagagtgatctaccagcagggcaccagttgacatgacataggcacttatactattgactaaacaaaataactttttcaaa 40640330  T
Q  196 aaaagtcaatttt 208  Q
    |||||||||||||    
T  40640329 aaaagtcaatttt 40640317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7758323 - 7758106
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||||      ||||||||  | |||||||||||||  ||||||||    
T  7758323 tattgcaattgtgtccctaattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattccccttatattttgtatgaagactgattt 7758225  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    |||| ||| ||||  ||||||||| |||| | ||| ||           ||||||||| |||| ||||||||||||||| |||| |||||||||||| ||    
T  7758224 gtaaaaagataaagcttagttttagagtgctccactag-----------ctgacatgatatcggcaattatactattgactaaacaaaataactttttca 7758136  T
Q  195 aaaaagtcaattttctgattacaacgtaga 224  Q
    ||||||| |||||||| ||| || ||||||    
T  7758135 aaaaagtaaattttctaatttcaccgtaga 7758106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 5125442 - 5125575
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||| |||||||||||||||| || | |||||| ||| |||||| || ||  |||||||| ||||||||| |||  ||||||||  |    
T  5125442 ttaatattttgtaagaggactgatttgtaataagatata-tttagtcttacagtggtccatcacaaagacactagctgacatggcattaacaattatgtt 5125540  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||| |||||||||||||||||| |||||||||||    
T  5125541 attggttaaataaaataactttttcaaaaaagtca 5125575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 48154513 - 48154374
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||| ||| |||||| || ||  |||||||| ||||||||| |||  |||| ||| ||    
T  48154513 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactagctgacatggcatgaacaactatgct 48154414  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| ||||| | ||||  |||||||||| ||||    
T  48154413 attggttaaacaaaatgatttttttaaaaaagtcattttt 48154374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44880938 - 44881061
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| || ||| |||||      ||||||| || |||||||||| |||||| | |||||    
T  44880938 tattacaattgtgtccctgattaaatcaaaattaaacatagattcaca-tttgtgcactaggattgaaattccccttaatattttatatgaggattgatt 44881036  T
Q  94 tgtaataaggtaaaatttagtttta 118  Q
    |||||||||||||| ||||||||||    
T  44881037 tgtaataaggtaaagtttagtttta 44881061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 29923191 - 29923057
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||| || ||  |||||    ||||||||| |||| | || ||||||    
T  29923191 ttaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcacaaagacgtcagctgacatggcatcaagaactatact 29923092  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||  ||||||||||| ||||||  ||||||||||    
T  29923091 attagttaaataaaatgactttttaaaaaaagtca 29923057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 29972344 - 29972210
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||| || ||  |||||    ||||||||| |||| | || ||||||    
T  29972344 ttaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcacaaagacgtcagctgacatggcatcaagaactatact 29972245  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||  ||||||||||| ||||||  ||||||||||    
T  29972244 attagttaaataaaatgactttttaaaaaaagtca 29972210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 36689674 - 36689784
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||  ||||| || ||  |||||||| |||||||||||||| |||| |||  |    
T  36689674 ttaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtccatcaacaagacactagctgacatgacatcaacaactatgtt 36689773  T
Q  169 attgattaaat 179  Q
    |||| ||||||    
T  36689774 attggttaaat 36689784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 11019700 - 11019847
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||| || ||| |||||||||||||||| ||||||||||| ||| |||||| || ||  |||||||| ||| |||| ||||  ||||| || ||    
T  11019700 ttaatattttatacgaggactgatttgtaataagataaaatttagtcttagagtggtccatcacaaagacactagctaacattacat-aacaatcatgct 11019798  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctgattaca 217  Q
    ||||  |||||||||| |||||| ||||||| ||| |||| ||| ||||    
T  11019799 attggctaaataaaatgactttttcaaaaaaatcatttttttgactaca 11019847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 31706568 - 31706507
Alignment:
Q  147 acatgacatcgacaattatactattgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  31706568 acatgacatcaaaaattatactattgattaaacaaaataactttttcaaaaaagtcagtttt 31706507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 12121279 - 12121217
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcacca 131  Q
    |||||||||||||| || | | ||||||||||||||||| |||||| ||| ||||||||||||    
T  12121279 ttaatattttgtataaggagttatttgtaataaggtaaagtttagtcttatagtggttcacca 12121217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 40744262 - 40744200
Alignment:
Q  72 atattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagta 134  Q
    |||||||||||||| | ||||||||||||||||||  |||||| ||| ||||||  |||||||    
T  40744262 atattttgtatgaggattgatttgtaataaggtaatgtttagtcttagagtggtctaccagta 40744200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 47871210 - 47871328
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||| |||||| |||||||||||| |  ||||| |||| | ||| |||| | |  ||| | |||||| | |||||||||||| ||| ||||| |    
T  47871210 ttaatattttatatgaggactgatttgtaacattgtaaagtttaatcttagagtgatccggcagcaggacactagttgacatgacatcaacagttatatt 47871309  T
Q  169 attgattaaataaaataac 187  Q
    ||||  |||||||||||||    
T  47871310 attggctaaataaaataac 47871328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 23165343 - 23165310
Alignment:
Q  174 ttaaataaaataacttttgcaaaaaagtcaattt 207  Q
    |||||||||||||||||| |||||||||||||||    
T  23165343 ttaaataaaataactttttcaaaaaagtcaattt 23165310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 48155111 - 48155075
Alignment:
Q  3 ttgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  48155111 ttgcaattgtgtccttgattaaatcaaaattaaacat 48155075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 49002372 - 49002594
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaatt-------cctttaatattttgtatgagaactgatt 93  Q
    ||||||||||||||  |||||||||||||| |||||||||||||| ||||| | ||||| | |||       || ||||||||||||||||| |||||||    
T  49002372 tattgcaattgtgtgtctgattaaatcaaaattaaacatagattcccatttgt-gcactaagattaaaattccccttaatattttgtatgaggactgatt 49002470  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||| ||||||| |||||||||| |||||| |||||| | |||| | ||||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  49002471 tgtaatgaggtaaagtttagttttagagtggtccaccagcaggacattagctgctatgacatcgacaattatactattgattaaataaaataactttttc 49002570  T
Q  194 aaaaaagtcaattttctgattaca 217  Q
    |||||| ||| |||||||| ||||    
T  49002571 aaaaaaatcagttttctgactaca 49002594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5781664 - 5781841
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||      |||||||| || |||||||||||||  ||||||||    
T  5781664 tattgcaattgtgtccttgattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattccctttatattttgtatgatgactgattt 5781762  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattga 173  Q
    ||||||| |||||| |||||||||||||||| |||||  | |||||| |||||||||| |||| |||||||||||||||    
T  5781763 gtaataaagtaaaacttagttttaaagtggtgcaccaacatgacactagctgacatgatatcggcaattatactattga 5781841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4902468 - 4902685
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||  || ||||||      ||||||||  ||||||||||||||||| ||| |||    
T  4902468 tattgcaatagtgtccctgattaaatcaaaattaaacatagattc-caaattatgcactaagatagaaattccccttaatattttgtatgagtactaatt 4902566  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| |||||||||| ||||||| ||  | | |||| |  || |||||| |||| || |||||||||||| |||| |||||||||||| |    
T  4902567 tgtaataaggtaaagtttagttttagagtggtttactggcaggacaataactaacatgatatcggcagttatactattgactaaacaaaataactttttc 4902666  T
Q  194 aaaaaagtcaattttctga 212  Q
    |||||||||||||||||||    
T  4902667 aaaaaagtcaattttctga 4902685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 4618655 - 4618440
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||| | ||| ||||||||||| |||||||||||||||||||| | ||||      |||||||||  ||||||||||||||||  |||||||    
T  4618655 tattgcaattgtatacctcattaaatcaaaattaaacatagattctcatttgt-gcaccaagattgaaattccccttaatattttgtatgatgactgatt 4618557  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||| |||| |||| |||||||||| |||||| |||||| |  ||| | ||| |||||||||||||| |||||| |||| ||||| ||||||| |||| |    
T  4618556 tgtagtaagataaagtttagttttagagtggtccaccagcagaacattagctcacatgacatcgacagttataccattggttaaacaaaataagtttttc 4618457  T
Q  194 aaaaaagtcaattttct 210  Q
    |||||||||||||||||    
T  4618456 aaaaaagtcaattttct 4618440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 22955212 - 22954998
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||||| | |||||      |||||| || |||||||||||||||||||||||||    
T  22955212 tattgcaattgtgtcccttattaaatcaacattaaacatagattctcatttgt-gcactaagattgaaatttcccttaatattttgtatgagaactgatt 22955114  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| |||||||||| |||||| |||||| | |||| | ||  |||||||| |   | ||||||||| |  |||| ||||||||||||      
T  22955113 tgtaataaggtaaagtttagttttagagtggtccaccagcaggacaatagc-aacatgacagcagtagttatactataggctaaacaaaataactttttt 22955015  T
Q  194 aaaaaagtcaattttct 210  Q
    |||||||| ||||||||    
T  22955014 aaaaaagttaattttct 22954998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 37854195 - 37853990
Alignment:
Q  2 attgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactga-tt 93  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||| |  ||||      ||||||||  ||||||||||||||||| ||||| ||    
T  37854195 attgcaattgtgtccctgattaaatcaaaattaaacatagattttcatttgta-cactaagattgaaattccccttaatattttgtatgaggactgaatt 37854097  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    || ||||| ||||| |||| ||||| |||||| |||||  |||||||| |||||| ||||| | ||  |||||||||||| |||| |||||||||||| |    
T  37854096 tggaataaagtaaagtttaattttagagtggtccaccaacaagacactagctgacgtgacacctacggttatactattgactaaacaaaataacttttcc 37853997  T
Q  194 aaaaaag 200  Q
    |||||||    
T  37853996 aaaaaag 37853990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 23402271 - 23402059
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||| ||||||||||||||||||||||||| | |||||| ||||||||||| | |||||      |||||| || ||||||||||||| ||  |||||||    
T  23402271 tatttcaattgtgtccctgattaaatcaaaat-aaacattgattctcatttgt-gcactaagactgaaatttcccttaatattttgtacgatgactgatt 23402174  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    ||||||| | |||| |||||||||| |||||| | |||  | |||||| |||||||| |||||| || |||||||||||  |||| ||||||||||||      
T  23402173 tgtaataggataaagtttagttttagagtggtcccccaacatgacactagctgacataacatcggcagttatactattggctaaacaaaataactttttt 23402074  T
Q  194 aaaaaagtcaatttt 208  Q
    |||||||||| ||||    
T  23402073 aaaaaagtcagtttt 23402059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8133459 - 8133290
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    ||||||||||| |||||| ||||||||||| |||||| |||||||| |||| | ||| |      ||||||||  ||||||||||  ||||  |||||||    
T  8133459 tattgcaattgcgtccctaattaaatcaaaattaaacgtagattcttatttgt-gcagtaagattgaaattccccttaatattttacatgaagactgatt 8133361  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaatta 164  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||  ||||||||||||| ||| ||||    
T  8133360 tgtaataaggtaaagtttagttttagagtggttcaccagcaagacaccagctgacatgacattgactatta 8133290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 25470643 - 25470782
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||| |||  ||||| || ||  |||||||| ||||||||| |||  |||| ||| ||    
T  25470643 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcacaaagacactcgctgacatggcatgaacaactatgct 25470742  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| ||||| ||||||  |||||||||| ||||    
T  25470743 attggttaaacaaaatgacttttttaaaaaagtcattttt 25470782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7743067 - 7743313
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattt-tttgc---------------actgaaattc-ctttaatattttgtatg 83  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||| |               | |||||| | |||||||||||| ||||    
T  7743067 tattgcaattgtgcccctgattaaattaaaattaaacatagattctcatttgttttccatttatacactaagattgaaatgctctttaatattttatatg 7743166  T
Q  84 agaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaa 183  Q
    ||  ||| |||||||||||||||| |||||||||| |||||| || ||  |  ||| | || ||||||||||||||| |||||||||||| |||| ||||    
T  7743167 agggctgctttgtaataaggtaaagtttagttttagagtggtccatcaacattacattagccgacatgacatcgacagttatactattgactaaacaaaa 7743266  T
Q  184 taacttttgcaaaaaagtcaattttctgattacaacgtagaggtctc 230  Q
    ||||||||  | ||||||||  ||||||| | || |||||| |||||    
T  7743267 taacttttctagaaaagtcagatttctgactccaccgtagaagtctc 7743313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 40382045 - 40382167
Alignment:
Q  9 ttgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatttgtaataa 101  Q
    |||||||||| ||||||| ||| ||||||||||||| |||||| | |||||      |||||| || ||||||||||||||| | |||||||||||||||    
T  40382045 ttgtgtccctaattaaataaaaattaaacatagattatcatttgt-gcactaagattgaaatttcccttaatattttgtatgcggactgatttgtaataa 40382143  T
Q  102 ggtaaaatttagttttaaagtggt 125  Q
    |||||| |||||||||| ||||||    
T  40382144 ggtaaagtttagttttagagtggt 40382167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 8759459 - 8759592
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||| || |||||||| |||| || | |||| | ||| |||||| || ||  |||||||| |||||||||||||| ||||||||  |    
T  8759459 ttaatattttgtaagaggaccgatttgtactaagatata-tttaatcttacagtggtccatcaaaaagacactagctgacatgacatcaacaattatgtt 8759557  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    ||||  |||||||||| |||||| |||||||||||    
T  8759558 attggctaaataaaatgactttttcaaaaaagtca 8759592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 10675085 - 10674928
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggct--gacatgacatcgacaattata 166  Q
    ||||||||||||||||| ||| ||||||||||| ||||| |||||| ||| |||| | ||| || |  ||||| | |  |||||| |||  ||| |||||    
T  10675085 ttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatccacaagcagaacactagttgagacatggcattaacagttata 10674986  T
Q  167 ctattgattaaataaaataacttttgcaaaaaagtcaattttctgattacaacgtaga 224  Q
    ||||||| |||| ||||||| ||||  |||||||| | ||| |||||| || ||||||    
T  10674985 ctattgaataaacaaaataatttttttaaaaaagttagtttcctgattgcaccgtaga 10674928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3038554 - 3038770
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| ||||| | |||||      |||||||| ||||||||||||||||  | ||||||    
T  3038554 tattgcaattgtgtccctgattaaatcaaaattaaacttagattcccatttat-gcactaagattgaaattcccttaatattttgtatgatgattgattt 3038652  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    ||||||||||||| |||||||||| |||||| |||||| |||||||| | ||||||||||||  ||||| ||||||||  |||| ||||||| ||||  |    
T  3038653 gtaataaggtaaagtttagttttagagtggtccaccagcaagacacttgttgacatgacatcagcaattctactattggctaaacaaaataattttttta 3038752  T
Q  195 aaaaagtcaattttctga 212  Q
    ||||||||||||||||||    
T  3038753 aaaaagtcaattttctga 3038770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 23176686 - 23176472
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||      ||||||||  | |||||||||||||| ||| ||||    
T  23176686 tattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattccccttatattttgtatgaggactaattt 23176588  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    |||||||| ||||  ||||||||| |||||| || ||  | |||||| |||||||||| ||||  |||||||||||||| |||| |||||||||||| ||    
T  23176587 gtaataagataaagcttagttttagagtggtccatcaacatgacactagctgacatgatatcggaaattatactattgaataaacaaaataactttttca 23176488  T
Q  195 aaaaagtcaattttct 210  Q
    ||||||||||||||||    
T  23176487 aaaaagtcaattttct 23176472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4108814 - 4108602
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||      ||||||||  | |||||||||||||  |||| |||    
T  4108814 tattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgt-gcactaaaattgaaattccccttatattttgtatgaagactgtttt 4108716  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    |||||||| ||||  |||||||||||||||| |||||  | |||||| |||||||||| | || |||||||| |||||| |||| |||||||||||| ||    
T  4108715 gtaataagataaagcttagttttaaagtggtccaccaacatgacactagctgacatgataacggcaattatattattgactaaacaaaataactttttca 4108616  T
Q  195 aaaaagtcaatttt 208  Q
    ||||||||||||||    
T  4108615 aaaaagtcaatttt 4108602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 7290867 - 7291082
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||| |||||| | |||||      ||||||||| ||||||||||||||||| | |||||    
T  7290867 tattgcaattgtattcctgattaaatcaaaattagacatagattttcatttgt-gcactaagattgaaattcctcttaatattttgtatgaggattgatt 7290965  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    ||||||||| |||| |||||||||| |||||||||| |  | |||||| | ||| |||||||||||| |||||||||||  |||| ||||||| |||| |    
T  7290966 tgtaataagataaagtttagttttagagtggttcacaaacaggacactagttgatatgacatcgacagttatactattgcctaaacaaaataattttttc 7291065  T
Q  194 aaaaaagtcaattttct 210  Q
    |||||||| ||||||||    
T  7291066 aaaaaagttaattttct 7291082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 18756493 - 18756350
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| || ||||||||||||||||||  ||||||||| |||||| |||||||| |||| | ||| |||| |||||| |||||||| |    
T  18756493 ttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtccaccagtaggacattagctaacataacatcggcaattatatt 18756394  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    ||||  |||| |||||||||||| | ||||| ||||||||||||    
T  18756393 attggctaaacaaaataactttttccaaaaaatcaattttctga 18756350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 28220869 - 28220711
Alignment:
Q  59 tgaaattcctttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcga 158  Q
    |||||||||  | |||||||||||||| |||||||||||||||| ||||  ||||||||| |||||| |||||  | |||| | ||  |||||| |||||    
T  28220869 tgaaattccccttatattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtccaccaacatgacattagcaaacatgatatcga 28220770  T
Q  159 caattatactattgattaaataaaataacttttgcaaaaaagtcaattttctgattaca 217  Q
    ||||||||||||||| |||| |||||||||||| |||||| ||||| ||||||| ||||    
T  28220769 caattatactattgactaaacaaaataactttttcaaaaatgtcaaatttctgactaca 28220711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 34685992 - 34686131
Alignment:
Q  64 ttcctttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaatt 163  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||| |||||| ||| ||||||  ||| | | |||||||  |||||||||||  ||| ||    
T  34685992 ttcccttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtggtctaccggcaggacactgcttgacatgacattaacagtt 34686091  T
Q  164 atactattgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||||||| | |||| |||||||||||| |||||||||||    
T  34686092 atactattaactaaaaaaaataacttttccaaaaaagtca 34686131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 6267405 - 6267279
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||  ||||| | |||||      ||||||||  ||||||||||||||||  |||||||    
T  6267405 tattgcaattatgtccttgattaaatcaaaattaaacatagatttgcatttgt-gcactaagattgaaattccccttaatattttgtatgatgactgatt 6267307  T
Q  94 tgtaataaggtaaaatttagttttaaag 121  Q
    ||||||||| |||| |||||||||||||    
T  6267306 tgtaataagataaagtttagttttaaag 6267279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 30651078 - 30650923
Alignment:
Q  61 aaattcct-ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatg-------- 151  Q
    |||||||| ||||||||| ||||||  ||||||||||||||||||||| |||| | ||| |||||| |||||| |  ||||||| |||||||            
T  30651078 aaattcctcttaatatttagtatgatgactgatttgtaataaggtaaagtttaatcttagagtggtccaccagcagaacactggttgacatgtagaagtc 30650979  T
Q  152 acatcgacaattatactattgattaaataaaataacttttgcaaaaaagtcaattt 207  Q
     | || ||| |||||| ||||| |||| |||||||||||| |||||||||||||||    
T  30650978 ccctcaacacttatacaattgactaaacaaaataactttttcaaaaaagtcaattt 30650923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 1872738 - 1872689
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagtttta 118  Q
    |||||||||||||| || |||||||| |||||| ||||||||| ||||||    
T  1872738 ttaatattttgtataaggactgatttataataaagtaaaatttggtttta 1872689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 5018554 - 5018587
Alignment:
Q  174 ttaaataaaataacttttgcaaaaaagtcaattt 207  Q
    |||||||||||||||||| |||||||||||||||    
T  5018554 ttaaataaaataactttttcaaaaaagtcaattt 5018587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 22616641 - 22616855
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaatt-------cctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| |||||       || ||||||||||||||||| |||||||    
T  22616641 tattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgt-gcactaaaattgaaattccccttaatattttgtatgaggactgatt 22616739  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| |||||||||| |||||| |||||| | |||||| ||||||||||   |  || |||||||||||  |||| |||||||||||| |    
T  22616740 tgtaataaggtaaagtttagttttagagtggtccaccagcaggacactagctgacatga---ctgcagttatactattggctaaacaaaataacttttcc 22616836  T
Q  194 aaaaaagtcaattttctga 212  Q
    |||||| ||| ||||||||    
T  22616837 aaaaaaatcagttttctga 22616855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 36055774 - 36055569
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||||||| | |||||      |||||||| ||||||| ||||||||||| ||||||    
T  36055774 tattacaattgtgtccccgattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattcccttaatatcttgtatgagaattgattt 36055676  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    ||||||||||||| |||||||||| |||||  |||||| | |||||| | |||| |||||||| || ||||||||||   |||| |||||||||||| ||    
T  36055675 gtaataaggtaaagtttagttttagagtgggccaccagcacgacactagttgacttgacatcgccagttatactattagctaaacaaaataacttttcca 36055576  T
Q  195 aaaaagt 201  Q
    |||||||    
T  36055575 aaaaagt 36055569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 12080558 - 12080412
Alignment:
Q  71 aatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactat 170  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||| | |||||| |||||||||||||| ||||||||  |||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcaggacactagctgacatgacatcaacaattatgttat 12080459  T
Q  171 tgattaaataaaataacttttgcaaaaaagtcaattttctgattaca 217  Q
     || |||| |||||||||||| ||||||||||||||| |||| ||||    
T  12080458 cgactaaacaaaataactttttcaaaaaagtcaatttcctgactaca 12080412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33163663 - 33163890
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattt-----tttgcactgaaattc-ctttaatattttgtatgagaactgattt 94  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |     ||   | |||||||  | ||||||||||||||||  ||||||||    
T  33163663 tattgcaattgtgtccctgattaaatcaaaattaaacataaattctcatgtgtgcattaagattgaaattttccttaatattttgtatgaagactgattt 33163762  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    ||||||||||||| ||||||||||||||||| || ||| | |||||| ||||||||||||||| || |||||||||||| ||||  |||||| |||| ||    
T  33163763 gtaataaggtaaagtttagttttaaagtggtcca-cagcatgacactagctgacatgacatcggcagttatactattgactaaa-caaataatttttcca 33163860  T
Q  195 aaaaagtcaattttctgattacaacgtaga 224  Q
    ||||||||  |||||||||| || ||||||    
T  33163861 aaaaagtcggttttctgattgcaccgtaga 33163890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 41417479 - 41417289
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||      ||||||||  ||| ||||||||||||  |||||||    
T  41417479 tattgcaattgtgtcccagattaaatcaaaattaaacatagattctcatttgt-gcactaagattgaaattccccttattattttgtatgatgactgatt 41417381  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaata 185  Q
    ||||||||||||||||||||||||||| || | |||||| | |||||  |||||||||||||||||| ||||||||||  ||||| ||||||    
T  41417380 tgtaataaggtaaaatttagttttaaaatgatccaccagcatgacaccagctgacatgacatcgacagttatactattagttaaacaaaata 41417289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 31878536 - 31878747
Alignment:
Q  6 caattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatatttt-gtatgagaactgatttgta 97  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||| | |||||      ||||||| | |||||||||| ||||| |||||||| ||||    
T  31878536 caattgtgtccctgattaaatcaaaattaaacatagattcctatttgt-gcactaagattgaaattcttcttaatatttttgtatgggaactgatctgta 31878634  T
Q  98 ataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaa 197  Q
    |||||||||| |||| ||||| |||||| |||||  | |||||| |||| || |||||||||| ||||||||||| ||||| ||| ||||||||   |||    
T  31878635 ataaggtaaagtttaattttagagtggtccaccaacaggacactagctggcacgacatcgacagttatactattggttaaacaaactaactttttttaaa 31878734  T
Q  198 aagtcaattttct 210  Q
    |||||||||||||    
T  31878735 aagtcaattttct 31878747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 27579248 - 27579391
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||||| | || | ||||||||||||||||||| |||||||||| |||||| ||||||||  ||||| ||| |||||||||||||| ||||| |    
T  27579248 ttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccagtagaacactagctaacatgacatcgacagttatatt 27579347  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    ||||  |||| | |||||||||| ||||||||| | ||||||||    
T  27579348 attgtctaaagataataacttttccaaaaaagttagttttctga 27579391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21320899 - 21321114
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaatt-------cctttaatattttgtatgagaactgatt 93  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||||||||   ||||| |||||       |  ||||||||||||||||| | |||||    
T  21320899 tattacaattgtgtctctgattaaatcaaaattaaacatagattctcatttga-gcactaaaattgaaatttcgcttaatattttgtatgaggattgatt 21320997  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    ||||  |||||||| |||||||||| | || | |||||| |  ||||| |||| ||||| |||| || |||||||||||  |||| |||||||||||| |    
T  21320998 tgtaggaaggtaaagtttagttttaga-tgatccaccagcagaacactagctggcatgaaatcgtcagttatactattggctaaacaaaataactttttc 21321096  T
Q  194 aaaaaagtcaattttctg 211  Q
    |||||||||| |||||||    
T  21321097 aaaaaagtcagttttctg 21321114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 29766628 - 29766498
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||| || |||||  ||||| | ||||||| |||  ||| |||||||    
T  29766628 ttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtccatcagtagaacactagttgacatggcattaacagttatact 29766529  T
Q  169 attgattaaataaaataacttttgcaaaaaa 199  Q
    ||||  ||||||||||||||| | |||||||    
T  29766528 attggataaataaaataacttatccaaaaaa 29766498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 25654589 - 25654704
Alignment:
Q  87 actgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataa 186  Q
    ||||||||||||||||||||| |||||||||| |||||| || || ||| ||||| | |||||| ||||| ||||||||||||||| ||||| |||||||    
T  25654589 actgatttgtaataaggtaaagtttagttttagagtggtccatcaataatacactagttgacat-acatcaacaattatactattggttaaacaaaataa 25654687  T
Q  187 cttttgcaaaaaagtca 203  Q
    |||||  ||||||||||    
T  25654688 cttttctaaaaaagtca 25654704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 33848173 - 33848030
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||| ||| ||| ||  | ||| | |||||| ||| ||||| |||  ||||||||| |    
T  33848173 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctatcagcatgacactagcttacatgtcattaacaattatatt 33848074  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    |||||||||| ||| |||||||| ||||| ||||||||||||||    
T  33848073 attgattaaacaaagtaactttttcaaaatagtcaattttctga 33848030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 8763022 - 8762883
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||| |||  ||||| || ||  |||||||| ||||||||| |||  |||| ||| ||    
T  8763022 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcacaaagacactcgctgacatggcatgaacaactatgct 8762923  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| ||||| ||||||  |||||||||| ||||    
T  8762922 attggttaaacaaaatgacttttttaaaaaagtcattttt 8762883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 13888329 - 13888468
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||| ||| || ||| || ||  |||||||| ||||||||| |||  |||| ||| |     
T  13888329 ttaatattttgtatgaggactgatttataataaagtaaaatttagtgttacaggggtccatcacaaagacactagctgacatggcataaacaactatgca 13888428  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||||||||| ||||||  |||||||||| ||||    
T  13888429 attggttaaataaaatgacttttttaaaaaagtcattttt 13888468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10237562 - 10237768
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||| |||||||||||| |||||||||||| | |||||||||||||||||| |  ||||      |||||| || ||||||||||||| ||  ||| |||    
T  10237562 tattccaattgtgtcccagattaaatcaaaat-aaacatagattctcatttgta-cactaagattgaaatttcccttaatattttgtacgatgactaatt 10237659  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| ||||||| || ||||||  ||||  | |||| | |||||||||||||||||  |||||||||||  |||| ||||||||||||      
T  10237660 tgtaataaggtaaagtttagttctagagtggtctaccaacatgacattagctgacatgacatcgac-gttatactattggctaaacaaaataacttttct 10237758  T
Q  194 aaaaaagtca 203  Q
    ||||||||||    
T  10237759 aaaaaagtca 10237768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 13381123 - 13381245
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||  ||| || ||| |||||| |  ||||| |||||||||||||| ||| |||||||    
T  13381123 ttaatattttgtatgaggattgatttataataaggtaaagtttagccttagagaggtccaccagcagaacactagctgacatgacatcaacagttatact 13381222  T
Q  169 attgattaaataaaataactttt 191  Q
    ||||| |||| ||||||| ||||    
T  13381223 attgactaaacaaaataattttt 13381245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 10053820 - 10053952
Alignment:
Q  69 ttaatattttgtatgagaactgattt--gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattata 166  Q
    ||||||||||||||||| ||||||||  ||||||| ||||||||||||  || |||||| |||         ||| |||||||||||||| ||| |||||    
T  10053820 ttaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtccac---------actagctgacatgacatcaacagttata 10053910  T
Q  167 ctattgattaaataaa-ataacttttgcaaaaaagtcaattt 207  Q
    ||||||  |||| ||| ||||||||| |||||||||||||||    
T  10053911 ctattgggtaaacaaacataactttttcaaaaaagtcaattt 10053952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 26412052 - 26412186
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||| || ||| ||||||||| |||||| || |||||||| ||| | |||| || ||  |||| | | |||||||||||||| ||||| || ||    
T  26412052 ttaatattttatacgaggactgatttgcaataagatataatttagtcttacaatggtccatcacaaagatattagctgacatgacatcaacaatcatgct 26412151  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    ||||  |||||||||| |||||| |||| ||||||    
T  26412152 attggctaaataaaatgactttttcaaataagtca 26412186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 3014672 - 3014785
Alignment:
Q  78 tgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaa 177  Q
    |||||||| | ||||||||||||| |||||||||||| ||| |||||| || ||  ||||||||  |||||||| |||  |||| ||| |||||| ||||    
T  3014672 tgtatgaggattgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactaactgacatggcatgaacaactatgctattggttaa 3014771  T
Q  178 ataaaataactttt 191  Q
    | ||||| ||||||    
T  3014772 acaaaatgactttt 3014785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 33752534 - 33752412
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||| ||| ||| ||  ||||  | |||| | ||| ||||| |||  ||||||||| |    
T  33752534 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctaccaacatgacagtagctcacatgtcattaacaattatatt 33752435  T
Q  169 attgattaaataaaataactttt 191  Q
    ||||| |||| ||| ||||||||    
T  33752434 attgactaaacaaagtaactttt 33752412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 12164136 - 12164016
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||| |||| |||||| |||||||||||||||   ||| ||||| |||| | |||| |||||  || ||||| |||||||||||||| |  ||||| ||    
T  12164136 ttaatgttttttatgaggactgatttgtaataaaaaaaagtttagatttacaatggtccaccaacaatacactagctgacatgacatcaatgattatcct 12164037  T
Q  169 attgattaaataaaataactt 189  Q
    ||||| |||| ||| ||||||    
T  12164036 attgactaaacaaattaactt 12164016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13380647 - 13380685
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  13380647 tattgcaattgtatccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13887389 - 13887427
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  13887389 tattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25521743 - 25521705
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  25521743 tattgcaattgtgtccttgattaaatcaaaattaaacat 25521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 15964253 - 15964444
Alignment:
Q  6 caattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatttgtaa 98  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||| | |||||      ||||||||  |||||||||| |||||| ||||||||||||    
T  15964253 caattgtgtccctgattaaatcaaaattaaacatagattcacatttgt-gcactaagattgaaattccccttaatattttatatgaggactgatttgtaa 15964351  T
Q  99 taaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataactttt 191  Q
    |||||||||||||||||||| |||||| ||  |||| |||||| |||||||||||||||||| |||||||||||  |||| ||||||| ||||    
T  15964352 taaggtaaaatttagttttagagtggtacattagtaggacactagctgacatgacatcgacagttatactattggctaaacaaaataattttt 15964444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 16135545 - 16135688
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||| |||||| | |||||||||||||||| |||||||    
T  16135545 ttaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtccaccagtatgacactagttgacatgacatcgacagttatact 16135644  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    |||   |||| |||||||||||| ||||||||  ||||||||||    
T  16135645 attagctaaacaaaataactttttcaaaaaagcaaattttctga 16135688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13876819 - 13876611
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||| ||||| | |||||      ||||||||  ||||||||||||||||| || ||||    
T  13876819 tattgcaattgtatccttgattaaatcaaaattaaacatagattcccatttgt-gcactaatattgaaattccccttaatattttgtatgagtaccgatt 13876721  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| |||||||||| |||||| |||||| | |||||| |||||||||||||||||| ||||||  ||   |||| |||||||||||||     
T  13876720 tgtaataaggtaaagtttagttttagagtggtccaccagcatgacactagctgacatgacatcgacagttataccgttcgctaaacaaaataacttttgt 13876621  T
Q  194 aaaaaagtca 203  Q
    ||||||||||    
T  13876620 aaaaaagtca 13876611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 16127677 - 16127893
Alignment:
Q  12 tgtccctgattaaatcaaagttaaacatagattctcattttttgcactgaaatt-------cctttaatattttgtatgagaactgatttgtaataaggt 104  Q
    ||||||||| ||||||||| |||||||||||||||||||| | ||||| | |||       || ||||||||||  ||||| |||| |||||||||||||    
T  16127677 tgtccctgaataaatcaaa-ttaaacatagattctcatttgt-gcactaagattgagattccccttaatattttaaatgaggactggtttgtaataaggt 16127774  T
Q  105 aaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaaaagtcaa 204  Q
    ||| |||||||||||||| || |||| | | ||||||  ||||||| ||||||||| | |||||||||| |||||||||||||||||  |||||||||||    
T  16127775 aaagtttagttttaaagtagtccacctgcaggacactaactgacataacatcgacagtaatactattgactaaataaaataactttt-taaaaaagtcaa 16127873  T
Q  205 ttttctgattacaacgtaga 224  Q
    |||||||| | |||||||||    
T  16127874 ttttctgacttcaacgtaga 16127893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27118478 - 27118703
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||  |||||      ||||||| || ||||||||||||||||  |||||||    
T  27118478 tattgcaattgtgtccctgattaaatcaaaattaaacatagattctca-ttcgtgcactaagattgaaattccccttaatattttgtatgatgactgatt 27118576  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| | |||||||| |||| | |||||| | ||  || |||||| |||||| || | ||||| |||||| |||| | |||||||    |    
T  27118577 tgtaataaggtaaagtatagttttagagtgatccaccagcaggatcctagctgacgtgacattgatagttatattattgactaaacacaataact----c 27118672  T
Q  194 aaaaaagtcaattttctgattacaacgtaga 224  Q
    |||||||| ||||||| || |||| ||||||    
T  27118673 aaaaaagttaattttccgactacaccgtaga 27118703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 47554968 - 47555111
Alignment:
Q  61 aaattcct-ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgac 159  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||| |||| | ||| ||||||  || || | |||||| | ||||||| | || ||    
T  47554968 aaattcctcttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtggtctactagcaggacactagttgacatggcctcaac 47555067  T
Q  160 aattatactattgattaaataaaataacttttgcaaaaaagtca 203  Q
    | ||||||||||| ||||| |||||||||||| |||||||||||    
T  47555068 agttatactattggttaaacaaaataactttttcaaaaaagtca 47555111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 10758200 - 10758024
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||| |||||      ||||||| || |||||||||| |||||  |||||      
T  10758200 tattgcaattgtgtccctaattaaatcaaaattaaacatatattctca-tttgtgcactaagattgaaatttctcttaatattttatatgatgactgaag 10758102  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactatt 171  Q
    |||||||| | |||||||||||||| |||| | |||||| | ||||||  || |||| |||||| || ||||||||||    
T  10758101 tgtaataaagcaaaatttagttttagagtgatccaccagcaggacactaactcacataacatcggcagttatactatt 10758024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 31804978 - 31804854
Alignment:
Q  7 aattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaa-ttcctttaatattttgtatgagaactgatttgtaat 99  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||| |||||      ||||| |||| |||||||||| |||||||| || ||||||||    
T  31804978 aattgtgtcactgattaaatcaaaattaaacatagattctca-tttatgcactaagattgaaatttcccttaatattttatatgagaattggtttgtaat 31804880  T
Q  100 aaggtaaaatttagttttaaagtggt 125  Q
    |||||||| |||| ||||| ||||||    
T  31804879 aaggtaaagtttaattttatagtggt 31804854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 3120688 - 3120548
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||| | ||| |||||| |||||  | ||||||   ||||||  |||| ||| ||||| |    
T  3120688 ttaatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagagtggtccaccaagaggacactaattgacatagcatcaacagttatatt 3120589  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttc 209  Q
    |||| ||||| ||||||| ||||  |||||||||| |||||    
T  3120588 attggttaaacaaaataatttttttaaaaaagtcagttttc 3120548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 25943363 - 25943573
Alignment:
Q  18 tgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatttgtaataaggtaaaatt 110  Q
    ||||||||||||| |||||||||||||||||||| | ||| |      |||||| || ||||||||||||| ||  |||||||||||||||| |||||||    
T  25943363 tgattaaatcaaaattaaacatagattctcatttgt-gcaataagattgaaatttctcttaatattttgtacgatgactgatttgtaataagataaaatt 25943461  T
Q  111 tagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaaaagtcaattttct 210  Q
    ||||  || |||||| |||||  |  |  || | |||||||| |||||||||||||||||||  |||| |||||||  |||    |||||||||||||||    
T  25943462 tagtagtagagtggtccaccaacagaatgctagttgacatgagatcgacaattatactattggctaaacaaaataatgttt--ttaaaagtcaattttct 25943559  T
Q  211 gattacaacgtaga 224  Q
    || | |||||||||    
T  25943560 gacttcaacgtaga 25943573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 422205 - 422339
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| ||| | ||||||||| ||||| ||||||  || |||||| || ||  |||||| | |||||||||| ||| || | |||  |    
T  422205 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtccatcaacaagacattagctgacatgatatcaactactatgtt 422304  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||| ||||||||||| |||||| |||||||||||    
T  422305 attggttaaataaaatgactttttcaaaaaagtca 422339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16132623 - 16132673
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattt 51  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  16132623 tattgcaattgtgtctctgattaaatcaaaattaaacatagattctcattt 16132673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 5500596 - 5500707
Alignment:
Q  89 tgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataact 188  Q
    |||||| ||||||||||||||||||||||| |||| | ||| |   | ||||| |||||||||||||||| | ||||||||||   |||| |||||||||    
T  5500596 tgatttataataaggtaaaatttagttttagagtgatccacgacaga-acactagctgacatgacatcgatagttatactattagctaaacaaaataact 5500694  T
Q  189 tttgcaaaaaagt 201  Q
    ||| |||||||||    
T  5500695 ttttcaaaaaagt 5500707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 28012925 - 28013056
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||| ||| || ||| ||||||||||||||||||||| |||| | ||    ||||  | ||| |||||||| |||||||||||||| |||||||| ||    
T  28012925 ttaatagtttttacgaggactgatttgtaataaggtaaagtttactcttgcgatggtctatcagcaagacactagctgacatgacatcaacaattatgct 28013024  T
Q  169 attgattaaataaaataacttttgcaaaaaag 200  Q
    ||||  |||  |||||||||||| ||||||||    
T  28013025 attggctaaccaaaataactttttcaaaaaag 28013056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21263945 - 21263907
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  21263945 tattgcaattgtgtccttgattaaatcaaaattaaacat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 421542 - 421579
Alignment:
Q  2 attgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  421542 attgcaattgtgtccttgattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 4146753 - 4146712
Alignment:
Q  162 ttatactattgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||| |||||||||||| |||||||||||| |||||||||||    
T  4146753 ttattctattgattaaacaaaataactttttcaaaaaagtca 4146712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 42663284 - 42663251
Alignment:
Q  174 ttaaataaaataacttttgcaaaaaagtcaattt 207  Q
    |||||||||||||||||| |||||||||||||||    
T  42663284 ttaaataaaataactttttcaaaaaagtcaattt 42663251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 26970835 - 26970891
Alignment:
Q  161 attatactattgattaaataaaataacttttgcaaaaaagtcaattttctgattaca 217  Q
    ||||| |||||| | |||||||||||||||| ||||||||||| ||| |||| ||||    
T  26970835 attatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactaca 26970891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 17612482 - 17612699
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttt-tgc----actgaaattcct-ttaatattttgtatgagaactgattt 94  Q
    |||||||||| |||||  |||||||||||| |||||||||||||  ||||| | |||    | |||||||||  || ||||||| |||||| ||| ||||    
T  17612482 tattgcaattatgtcctagattaaatcaaaattaaacatagattgccatttgtgtgctaagattgaaattcccctttatattttctatgaggactaattt 17612581  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
    |||||||||||||||||||||||| |||||| |||||  | |||||| |||||||||||||||||| |||||||||||  ||||||||||||||||| ||    
T  17612582 gtaataaggtaaaatttagttttagagtggtccaccaacaggacactagctgacatgacatcgacagttatactattggctaaataaaataactttttca 17612681  T
Q  195 aaaaagtcaattttctga 212  Q
    ||||| | ||||||||||    
T  17612682 aaaaaatgaattttctga 17612699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2570626 - 2570843
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattc-ctttaatattttgtatgagaactgatt 93  Q
    |||||||||||||||||| |||||||||||  ||||||||||||  ||||| | |||||      ||||||| | |||||||||||| |||| | |||||    
T  2570626 tattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgt-gcactaagattgaaattcaccttaatattttgtttgaggaatgatt 2570724  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| |||||||||| |||||| |||||| |  ||||| ||| |||||||||||||||||||| |||||  |||| | ||||||||||      
T  2570725 tgtaataaggtaaagtttagttttagagtggtccaccagcagaacactagctaacatgacatcgacaattatattattgtctaaacataataacttttct 2570824  T
Q  194 aaaaaagtcaattttctga 212  Q
    |||||| ||| ||||||||    
T  2570825 aaaaaaatcagttttctga 2570843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 9743812 - 9743948
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||| |||| | ||||||   |||||| | | ||||||| | |||||||||| |    
T  9743812 ttaatattttgtatgaggactggtttgtaataatgtaaaatttagttttagagtgatccaccag---gacactagttaacatgacgttgacaattatatt 9743908  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| |||||||||||| ||||||||||||||||    
T  9743909 attggttaaacaaaataactttttcaaaaaagtcaatttt 9743948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 2266739 - 2266561
Alignment:
Q  18 tgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatttgtaataaggtaaaatt 110  Q
    ||||||||||||| |||||||||||||| ||||| | |||||      |||||| || ||||||||||||||||| ||||||||||||||| ||||| ||    
T  2266739 tgattaaatcaaaattaaacatagattcccatttgt-gcactaagattgaaatttcccttaatattttgtatgaggactgatttgtaataatgtaaagtt 2266641  T
Q  111 tagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataactttt 191  Q
    || ||||| || ||| |||||| | |||||| ||||||||| |||||||| |||||||||||  |||| ||||||||||||    
T  2266640 ta-ttttagaggggtccaccagcaggacactagctgacatggcatcgacagttatactattggctaaacaaaataactttt 2266561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2708021 - 2708196
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||| | |||||      ||||||||  |  |||||||||||||  |||||||    
T  2708021 tattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgt-gcactaagattgaaattccccttctattttgtatgagggctgattt 2708119  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactatt 171  Q
    |||||||| ||||  ||||||||| |||||| |||||  | |||||| |||||||||| |||| |||||||||||||    
T  2708120 gtaataagataaagcttagttttagagtggtccaccaacatgacactagctgacatgatatcggcaattatactatt 2708196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 5915096 - 5914957
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    |||||||||| |||||| ||| ||||||||||| |||||||||||| ||| |||||| || ||  |||||||| |||||||||  ||  |||| | | ||    
T  5915096 ttaatattttttatgaggactaatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactagctgacatggtatgaacaactttgct 5914997  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| ||||| ||||||  |||||||||| ||||    
T  5914996 attggttaaacaaaatgacttttttaaaaaagtcattttt 5914957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 49878892 - 49878993
Alignment:
Q  64 ttcctttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaatt 163  Q
    |||| ||||||||||||||||  |||||||| |||||||||||| |||||| ||| | |||| ||||||  ||||||| | |||||||||||| ||||||    
T  49878892 ttcccttaatattttgtatgatgactgatttataataaggtaaagtttagtcttagaatggtccaccag-cagacactagttgacatgacatcaacaatt 49878990  T
Q  164 ata 166  Q
    |||    
T  49878991 ata 49878993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 14246414 - 14246548
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||   || ||| ||||||||||| |||||||||||| ||| |||||| || ||  ||||||   ||||||||| |||  | |||||| ||    
T  14246414 ttaatattttgttcaaggacttatttgtaataaagtaaaatttagtcttatagtggtccatcacaaagacatcagctgacatggcattaagaattatgct 14246513  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    ||||  |||||||||| |||||| |||||||||||    
T  14246514 attggctaaataaaatgactttttcaaaaaagtca 14246548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54995699 - 54995649
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattt 51  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  54995699 tattgcaattgtgtccctgattaaatcaaaattaaatatagattcttattt 54995649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 54995068 - 54995016
Alignment:
Q  73 tattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggt 125  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||    
T  54995068 tattttgtatgaggactgatttgtaataaagtaaaagttagttttagagtggt 54995016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 1012529 - 1012596
Alignment:
Q  89 tgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatc 156  Q
    |||||||||||||||||||||||||||||| | |||| ||| || |  ||||| ||||||||||||||    
T  1012529 tgatttgtaataaggtaaaatttagttttagaatggtccactagcagtacactagctgacatgacatc 1012596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1012444 - 1012489
Alignment:
Q  1 tattgcaatt-gtgtccctgattaaatcaaagttaaacatagattc 45  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  1012444 tattgcaatttgtgtccctgattaaatcaaaattaaacatagattc 1012489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 28292486 - 28292430
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggt 125  Q
    ||||||||||||||||  | ||||||||||||||||||| |||||| ||| ||||||    
T  28292486 ttaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagtggt 28292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 5915693 - 5915657
Alignment:
Q  3 ttgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  5915693 ttgcaattgtgtccttgattaaatcaaaattaaacat 5915657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 9409522 - 9409589
Alignment:
Q  144 ctgacatgacatcgacaattatactattgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    ||||||||||||| | | |||||||||||| |||  ||||||||| || ||||||||||| ||||||||    
T  9409522 ctgacatgacatcaa-agttatactattgactaatcaaaataactctttcaaaaaagtcagttttctga 9409589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5738 - 5941
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcctttaatattttgtatgagaactgattt 94  Q
    |||||||||| ||||||| ||||||||||| |||||||| ||||| ||||| || || |      |||||| ||||||||||||||||||||||||||||    
T  5738 tattgcaattatgtccctcattaaatcaaaattaaacatggattcgcatttgtt-cattaagatcgaaatttctttaatattttgtatgagaactgattt 5836  T
Q  95 gtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgca 194  Q
     |||||||||||| |||||||||| |||||| ||| ||  |||||||  |||||||||| || ||| |||||||||| |||||||||||||| |||| ||    
T  5837 ataataaggtaaagtttagttttagagtggtccactag-cagacactaactgacatgacttccacagttatactattaattaaataaaataatttttcca 5935  T
Q  195 aaaaag 200  Q
    ||||||    
T  5936 aaaaag 5941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 4104238 - 4104381
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||  | ||||||||||||||| ||| |||||||||| |||||| |||||| | ||||||  |||||||||||||||||||||||||    
T  4104238 ttaatattttgtatgaagattgatttgtaataaggcaaagtttagttttagagtggtccaccagcacgacactaactgacatgacatcgacaattatact 4104337  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    |||||  | | |||||||||||| ||||||||||| ||||||||    
T  4104338 attgacaagacaaaataactttttcaaaaaagtcagttttctga 4104381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 11084054 - 11083845
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgc-----actgaaattcctttaatattttgtatgagaactgatttg 95  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||       | |||||||||  | ||||||||||| || |||||||||    
T  11084054 tattgcaattgtgtctctgattaaatcaaaattaaacatagattctcatttgttcattaagattgaaattccccttatattttgtataaggactgatttg 11083955  T
Q  96 taataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgcaa 195  Q
    ||||||| ||||  ||||||||| ||||||  | ||    |||||| |||||||||| || ||||||||||||||| | ||||||||||||||||| |||    
T  11083954 taataagataaagcttagttttagagtggtctatcac---gacactagctgacatgatattgacaattatactattaactaaataaaataactttttcaa 11083858  T
Q  196 aaaagtcaatttt 208  Q
    |||||| ||||||    
T  11083857 aaaagtaaatttt 11083845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 26301825 - 26301609
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttt-tgc----actgaaattcc-ttta---atattttgtatgagaactga 91  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| | | |    | ||||||||| ||||   ||||||||||||||||||||    
T  26301825 tattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgtactaagattgaaattccctttatatatattttgtatgagaactga 26301726  T
Q  92 tttgt-aataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttt 190  Q
    ||||| |||||| ||||| ||| ||||| |||||  |||||  | |||||| || ||||||| |||| ||||||||| ||||| |||||||||||| |||    
T  26301725 tttgtaaataagataaaacttaattttagagtggcccaccaacatgacactagccgacatgatatcggcaattatac-attgactaaataaaataatttt 26301627  T
Q  191 tgcaaaaaagtcaatttt 208  Q
    | |||||| |||||||||    
T  26301626 ttcaaaaatgtcaatttt 26301609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 34993979 - 34994175
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaattcct-ttaatattttgtatgagaactgatt 93  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||| | |||||      ||||||||  |||||||||| ||| ||||||||||    
T  34993979 tattacaattgtgtccttgattaaatcaaaattaaacatagattctcatttat-gcactaagattgaaattccccttaatattttatataagaactgatt 34994077  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataactttt 191  Q
    ||||||||| || |||||||||||| | | || |||||| | |||||| || ||||||||||| ||| ||||  |||||  |||| ||||||| ||||    
T  34994078 tgtaataagatacaatttagttttagaatagtccaccagcatgacactagccgacatgacatcaacacttattatattggctaaacaaaataattttt 34994175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 4487882 - 4487743
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||| ||| |||||| || ||  |||||||| ||||||||| |||  |||| ||| ||    
T  4487882 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactagctgacatggcatgaacaactatgct 4487783  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| ||||| ||||||  |||||||||| ||||    
T  4487782 attggttaaacaaaatgacttttttaaaaaagtcattttt 4487743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 25441709 - 25441848
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||| ||| |||||| || ||  |||||||| ||| |||||||||  |||| ||| ||    
T  25441709 ttaatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtccatcacaaagacactagctaacatgacatgaacaactatgct 25441808  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaatttt 208  Q
    |||| ||||| ||||| ||||||  |||||||||| ||||    
T  25441809 attggttaaacaaaatgacttttttaaaaaagtcattttt 25441848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 30341461 - 30341583
Alignment:
Q  92 tttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataactttt 191  Q
    |||||||||||||||| || ||||||| |||| |||||||  | |||||| ||| ||||||||||  ||||||||||| ||  |||| |||||||||||     
T  30341461 tttgtaataaggtaaagttcagttttagagtgattcaccatcaggacactagctaacatgacatcagcaattatactactggctaaacaaaataactttc 30341560  T
Q  192 gcaaaaaagtcaattttctgatt 214  Q
     |||| |||||||||||||||||    
T  30341561 tcaaacaagtcaattttctgatt 30341583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 18306707 - 18306573
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||| ||| | |||||||||||||||||||||||  | | | |||||| || ||| |||||||| ||||||||| |||| ||| |||| ||    
T  18306707 ttaatattttgtacgaggattgatttgtaataaggtaaaatttgatctaacagtggtccatcagcaagacactagctgacatggcatcaacatttattct 18306608  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    ||||  |||| ||||| || ||| |||||||||||    
T  18306607 attggctaaacaaaatgacatttccaaaaaagtca 18306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 19631996 - 19632112
Alignment:
Q  96 taataaggtaaaatttagttttaaagtggttcaccagtaagacactg--gctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    ||||||||||||| ||||||||| |||||| |||||| | ||||||   | |||||||||||||||| |||||||||||   ||| ||||||||||||      
T  19631996 taataaggtaaaacttagttttagagtggtccaccagcaggacactcctggtgacatgacatcgacagttatactattgtccaaacaaaataactttttg 19632095  T
Q  194 aaaaaagtcaattttct 210  Q
    |||||| ||||||||||    
T  19632096 aaaaaaatcaattttct 19632112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 6613819 - 6613676
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| | | |||||||||||||| || |||||| ||| |||||| |||||| |   || | | ||||||| |||  | | |||||||    
T  6613819 ttaatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagagtggtccaccagcagaccattagttgacatggcattaagacttatact 6613720  T
Q  169 attgattaaataaaataacttttgcaaaaaagtcaattttctga 212  Q
    ||||| |||| |||||||||||| ||||||||||| ||| ||||    
T  6613719 attgactaaacaaaataactttttcaaaaaagtcagtttcctga 6613676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30341172 - 30341221
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatt 50  Q
    |||||||||||||| | ||||||||||||| ||||| |||||||| ||||    
T  30341172 tattgcaattgtgttcatgattaaatcaaaattaaatatagattcccatt 30341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 24717 - 24510
Alignment:
Q  1 tattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcact------gaaatt-cctttaatattttgtatgagaactgatt 93  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||| | |||||      |||||| || ||||||||||||| ||  |||||||    
T  24717 tattccaattgtgtccctgattaaatcaaaat-aaacatagattctcatttgt-gcactaagattgaaatttcccttaatattttgtacgatgactgatt 24620  T
Q  94 tgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatactattgattaaataaaataacttttgc 193  Q
    |||||||||||||| ||||||| || |||| | |||||  | |||||| ||||||||||||||| || |||||||||||  | || ||||||||||||      
T  24619 tgtaataaggtaaagtttagttctagagtgatccaccaacatgacactagctgacatgacatcggcagttatactattggcttaacaaaataacttttct 24520  T
Q  194 aaaaaagtca 203  Q
    ||||||||||    
T  24519 aaaaaagtca 24510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 8367 - 8233
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggttcaccagtaagacactggctgacatgacatcgacaattatact 168  Q
    ||||||||||||||||| ||| | ||||||||| ||||| ||||||  || |||||| || ||  |||||| | |||||||||| ||| || | |||  |    
T  8367 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtccatcaacaagacattagctgacatgatatcaactactatgtt 8268  T
Q  169 attgattaaataaaataacttttgcaaaaaagtca 203  Q
    |||| ||||||||||| |||||| |||||||||||    
T  8267 attggttaaataaaatgactttttcaaaaaagtca 8233  T

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Target: scaffold0312; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 9030 - 8993
Alignment:
Q  2 attgcaattgtgtccctgattaaatcaaagttaaacat 39  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  9030 attgcaattgtgtccttgattaaatcaaaattaaacat 8993  T

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Target: scaffold0262 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 11495 - 11443
Alignment:
Q  73 tattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggt 125  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||    
T  11495 tattttgtatgaggactgatttgtaataagataaaatttagtcttagagtggt 11443  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 65992 - 66048
Alignment:
Q  69 ttaatattttgtatgagaactgatttgtaataaggtaaaatttagttttaaagtggt 125  Q
    ||||||||||||||||| ||| |||| |||||||||||| |||||| ||||||||||    
T  65992 ttaatattttgtatgaggactaatttataataaggtaaagtttagtgttaaagtggt 66048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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