View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_high_34 (Length: 227)
Name: NF18999_high_34
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_high_34 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 11019093 - 11019313
Alignment:
| Q |
7 |
ataactccgtgggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcaga |
106 |
Q |
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| T |
11019093 |
ataactccgtgggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcaga |
11019192 |
T |
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| Q |
107 |
acaaaggctaaatagattggttttagtcgatgaaatgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgag |
206 |
Q |
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| T |
11019193 |
acaaaggctaaatagattggttttagtcgatgaaatgaaggtggctttgaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgag |
11019292 |
T |
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| Q |
207 |
agagttaaggagttgatggaa |
227 |
Q |
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||||||||||||||||||||| |
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| T |
11019293 |
agagttaaggagttgatggaa |
11019313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 11050227 - 11050429
Alignment:
| Q |
25 |
ttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaaggctaaatagatt |
124 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11050227 |
ttgtgattcattgtggatggaactccgtgttggaagctatttatgaaggggtgccaatgattgcatggcctttgtttgcagaacaaaggctaaatagatt |
11050326 |
T |
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| Q |
125 |
ggttttagtcgatgaaatgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggagttgatg |
224 |
Q |
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| T |
11050327 |
ggttttagtcgatgaaatgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcgcagaattgggtgagagagttaaggagttgatg |
11050426 |
T |
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| Q |
225 |
gaa |
227 |
Q |
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||| |
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| T |
11050427 |
gaa |
11050429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 11002723 - 11002932
Alignment:
| Q |
18 |
ggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaaggctaa |
117 |
Q |
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|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| | | |
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| T |
11002723 |
ggtggattcgtgactcactgtggatggaactcagtgttggaagctatttgtgaaggagtgcctatgattgcatggcctttgtatgcagaacaaaggttga |
11002822 |
T |
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| Q |
118 |
atagattggttttagtcgatgaaatgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaagga |
217 |
Q |
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| | | || |||| || || ||||||||||||||||| || | || ||| |||| ||||||||||||| | |||||||| |||||||||||||| |
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| T |
11002823 |
acaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaagga |
11002922 |
T |
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| Q |
218 |
gttgatggaa |
227 |
Q |
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|||||||||| |
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| T |
11002923 |
gttgatggaa |
11002932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 10968543 - 10968640
Alignment:
| Q |
18 |
ggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaaggct |
115 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||| | || ||||| || | |||||||||||||| |
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| T |
10968543 |
ggtggattcgtgacacattgtggatggaactcggtgttggaagctatttgtgaaggagtgcctatggtggcgtggccattatatgcagaacaaaggct |
10968640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 10982493 - 10982590
Alignment:
| Q |
18 |
ggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaaggct |
115 |
Q |
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| T |
10982493 |
ggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatgcagaacaaaggct |
10982590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 11079864 - 11080073
Alignment:
| Q |
18 |
ggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaaggctaa |
117 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | ||||| | | ||| || || | | | | |
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| T |
11079864 |
ggtgggttcgtgactcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatga |
11079963 |
T |
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| Q |
118 |
atagattggttttagtcgatgaaatgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaagga |
217 |
Q |
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|||||||| |||| || | ||| ||| |||||||| || |||| | ||| || || |||||||||||| | |||||||| |||||||||||||| |
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| T |
11079964 |
atagattgattttggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaagga |
11080063 |
T |
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| Q |
218 |
gttgatggaa |
227 |
Q |
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|||||||||| |
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| T |
11080064 |
gttgatggaa |
11080073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 24462304 - 24462263
Alignment:
| Q |
18 |
ggtggatttgtgactcattgtggatggaactccgtgttggaa |
59 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
24462304 |
ggtgcatttttgactcattgtggatggaactcagtgttggaa |
24462263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 23628149 - 23628117
Alignment:
| Q |
28 |
tgactcattgtggatggaactccgtgttggaag |
60 |
Q |
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| T |
23628149 |
tgactcattgtggatggaactcggtgttggaag |
23628117 |
T |
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