View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_high_4 (Length: 578)
Name: NF18999_high_4
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 311 - 560
Target Start/End: Complemental strand, 31041048 - 31040799
Alignment:
| Q |
311 |
ccaacaaaatcttgggcatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctc |
410 |
Q |
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| T |
31041048 |
ccaacaaaatcttgggtatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctc |
31040949 |
T |
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| Q |
411 |
actttgtcaattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgtattgaacaagacttgtctagtctg |
510 |
Q |
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| T |
31040948 |
actttgtcaattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgtattgaacaagacttgtctagtctg |
31040849 |
T |
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| Q |
511 |
tctccttgctttcagcatcagctgattttcgaggtctctactgtcctgag |
560 |
Q |
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| T |
31040848 |
tctccttgctttcagcatcagctgattttcgaggtctctcctgtcctgag |
31040799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 31041350 - 31041145
Alignment:
| Q |
11 |
gagagagatgaattccttaaggtcgagataatcatgcattaatgcagtcacatgatctcaaccatttattcttaataagacaaaccactaaatcaaggta |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
31041350 |
gagagaaatgaattccttaaggtcgagataatcatgcattaatgcagtcacatgatctcaaccatttattcttaataagacaaaccg-taagtcaaggta |
31041252 |
T |
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| Q |
111 |
tgacaccattaaaatctaaacaatgtgatcttaatcagacgattcatataatactattcgaatgcattacaactagcaaaccacgt---tagagtgtttg |
207 |
Q |
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| T |
31041251 |
tgacaccattaaaatctaaaaaatgtgatcttaatcagacgattcatataatactattcgaatgcattacaactagcaaaccaggtagagagagtgtttg |
31041152 |
T |
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| Q |
208 |
ggattgg |
214 |
Q |
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| T |
31041151 |
ggattgg |
31041145 |
T |
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