View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_11 (Length: 377)
Name: NF18999_low_11
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 52880800 - 52881155
Alignment:
| Q |
17 |
agatgaagtctctttggaattgtaatgcagactcaagttcatctagcgagcctacaaaagtttgaatcatcacgttgttcaatgaaactgggaaaatgat |
116 |
Q |
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| T |
52880800 |
agatgaagtctctttggaattgtaatgcagactcaagttcatctagcgagcctacaaaagtttgaatcatcacgttgttcaatgaaactgggaaaatgat |
52880899 |
T |
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| Q |
117 |
caaagatacatcgatataaa-cttaatgacatgtgaattattcaatgggtatgggaaaattaccaggtgtacaggttactccattcttgggctttcatga |
215 |
Q |
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| T |
52880900 |
caaagatacatcgatataaaacttaatgacatgtgaattattcaatgggtatgggaaaattaccaggtgtacaggttactccattcttgggctttcatga |
52880999 |
T |
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| Q |
216 |
atatctcttgtaattaat---aattaatcaatgaaaattaactttctttctttgtctcttcgtactctcatttcagataaatgcttcgtaatttttgcga |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52881000 |
atatctcttgtaattaataataattaatcaatgaaaattaactttctttctttgtctcttcgtactctcatttcagataaatgcttcgtaatttttgcga |
52881099 |
T |
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| Q |
313 |
gaaagaaggaaaataaaatgtttttaagtttaccattgtttctctcggagtattat |
368 |
Q |
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| T |
52881100 |
gaaagaaggaaaataaaatgtttttaagtttaccattgtttctctcggagtattat |
52881155 |
T |
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