View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_12 (Length: 376)
Name: NF18999_low_12
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 36422894 - 36423148
Alignment:
| Q |
14 |
atcatcacaattttgtttgtttttcttgaaactaatgcttctaagttgcaaagaaattgatgatccttatcttactattcttttgttccttgtttgtaag |
113 |
Q |
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| T |
36422894 |
atcatcacaattttgtttgttttt-tggaaactaatgcttctaagttgcaaagaaattgatggttcttatcttactattattttgttcccaatttgtaag |
36422992 |
T |
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| Q |
114 |
atgttcaactaatcaagctcaaaccttgtaagagtgaggttcatggtgttttgttaaaacttgaatatgcaattaacaatgacggtccttttatggtggt |
213 |
Q |
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| T |
36422993 |
gtgttcaactaatcaagctcaaaccttataagagtgaggttcatggtgttttgttaaaacttgaatatgcaattaacaatgacggcccttttatggtggt |
36423092 |
T |
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| Q |
214 |
gnnnnnnnattaatattttgacggtgatttatcatagtaagtgcaacagagtgtga |
269 |
Q |
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| T |
36423093 |
gttattttattaatattttgacggtgatttatcatagtaagtgcaacagagtgtga |
36423148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 31555296 - 31555162
Alignment:
| Q |
223 |
ttaatattttgacggtgatttatcatagtaagtgcaacagagtgtgaaaatatatgttgaaatatatttcgctaggtattcgcgaggaggtggttcgtta |
322 |
Q |
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| T |
31555296 |
ttaattttttgacggtgatttatcatagtaagtgcaacagagtgtgaaaatatatgttgaaatatatttcgctaggtattcgcgaggaggtggttcgtta |
31555197 |
T |
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| Q |
323 |
tatatagcaccaatcgtgtaagaaacaatagaaat |
357 |
Q |
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| T |
31555196 |
tatatagcaccaatcgtgtaagaaacaatagaaat |
31555162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 31555457 - 31555309
Alignment:
| Q |
13 |
catcatcacaattttgtttgtttttcttgaaactaatgcttctaagttgcaaagaaattgatgatccttatcttactattcttttgttccttgtttgtaa |
112 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
31555457 |
catcatcacaattttatttgtttttcttgaaactaatgcttctaagttgcaaagaaattgatggtttttatcttactattcttttgttccttgtttgtaa |
31555358 |
T |
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| Q |
113 |
gatgttcaactaatcaagctcaaaccttgtaagagtgaggttcatggtg |
161 |
Q |
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| T |
31555357 |
gatgttcaactaatcaagctcaaaccttgttagagtgaggttcatggtg |
31555309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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