View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18999_low_15 (Length: 355)
Name: NF18999_low_15
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_15 |
 | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold1029 (2 HSPs) |
| | |
|
| [»] scaffold1033 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 24072083 - 24071743
Alignment:
| Q |
1 |
ctataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataatagatatacatatgttctgaatttacaatatat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24072083 |
ctataaacattgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagtattttaatagatatacatatgttctgaatttacaatatat |
24071984 |
T |
|
| Q |
101 |
--tcatatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaactt |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24071983 |
attcatattttaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgagaaactt |
24071884 |
T |
|
| Q |
199 |
gttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24071883 |
gttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagcggctcttg |
24071784 |
T |
|
| Q |
299 |
aaaacttgcatttgatattgaacaccaatcctattgatttt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071783 |
aaaacttgcatttgatattgaacaccaatcctattgatttt |
24071743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 28580463 - 28580115
Alignment:
| Q |
1 |
ctataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataataga----------tatacatatgttctgaatt |
90 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||| || |||||| |||||| |||| |
|
|
| T |
28580463 |
ctataaacactgaatcaagtctgttttattatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatatacaattgttctaaatt |
28580364 |
T |
|
| Q |
91 |
tacaatatattcatatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatg |
190 |
Q |
| |
|
|| ||||| || |||| |||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28580363 |
tagaatatctttttattgcaatgttctgatcaatctacacttttacattttcaggacgttacatatgtcaaacaagctttgatattcaagcaagtttata |
28580264 |
T |
|
| Q |
191 |
acaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagt |
290 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
28580263 |
agaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttaccgaggagatcaaagt |
28580164 |
T |
|
| Q |
291 |
ggctcttgaaaacttgcatttgatattgaacaccaatcctattgatttt |
339 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
28580163 |
ggctcttgaaaaactacatttgatattgaacaacaatcctattgatttt |
28580115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 26316465 - 26316120
Alignment:
| Q |
3 |
ataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataat----------agatatacatatgttctgaattta |
92 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||| ||||||||| |||| |||| | ||||| | |||||| ||||| |
|
|
| T |
26316465 |
ataaacactgaatcaagtttgttttactatcaaatcattaatttatagaatggtaagtattttaattgaagtacaaatatataaagttgttctagattta |
26316366 |
T |
|
| Q |
93 |
caatatattcatatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgac |
192 |
Q |
| |
|
||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26316365 |
caatatatt-ttatttcaatgttctcatcattctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataag |
26316267 |
T |
|
| Q |
193 |
aaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtgg |
292 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26316266 |
aaacttgttaaaatcgaatatccgatggagagtttttatttgatcgatatcatccaaaggcttaacattgaacactactttgttgaagagatcaaagtgg |
26316167 |
T |
|
| Q |
293 |
ctcttgaaaacttgcatttgatattgaacaccaatcctattgatttt |
339 |
Q |
| |
|
||||||| || | ||| |||||||||||||||||||| ||||||| |
|
|
| T |
26316166 |
ctcttgagaagctatattcgatattgaacaccaatcctaatgatttt |
26316120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 104 - 339
Target Start/End: Complemental strand, 28575297 - 28575062
Alignment:
| Q |
104 |
tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa |
203 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||||||| ||||| || ||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
28575297 |
tatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaa |
28575198 |
T |
|
| Q |
204 |
aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaac |
303 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
28575197 |
aatcgaagattcgatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaag |
28575098 |
T |
|
| Q |
304 |
ttgcatttgatattgaacaccaatcctattgatttt |
339 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28575097 |
ctacatttgatattgaacaccaatcctattgatttt |
28575062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 2 - 339
Target Start/End: Complemental strand, 28586606 - 28586272
Alignment:
| Q |
2 |
tataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataatagatatacatatgttctgaatttacaatatatt |
101 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| | |||| ||| || ||| |||| |
|
|
| T |
28586606 |
tataaacactgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagtaatttaattggagtacagttgtatcaaaga---aatgtatt |
28586510 |
T |
|
| Q |
102 |
catatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgtt |
201 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28586509 |
tttatttcaatattctgatcaatctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgtt |
28586410 |
T |
|
| Q |
202 |
aaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaa |
301 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
28586409 |
aaaattgaagatccgatggaaagtttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaa |
28586310 |
T |
|
| Q |
302 |
acttgcatttgatattgaacaccaatcctattgatttt |
339 |
Q |
| |
|
| | ||||||| ||||||||||||| | ||||||||| |
|
|
| T |
28586309 |
agctacatttgacattgaacaccaattcaattgatttt |
28586272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 104 - 332
Target Start/End: Complemental strand, 28568457 - 28568229
Alignment:
| Q |
104 |
tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa |
203 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
28568457 |
tatttcaatattctgatcaatctgcactcttacaattttaggatgttgtatatgtcaaacaagctttaatatttaagcaagtttataagaaacttgttaa |
28568358 |
T |
|
| Q |
204 |
aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaac |
303 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| ||||| |||| ||| || || ||||||||||||||||| |
|
|
| T |
28568357 |
aatcgaagatccgatggagagtttttatttgatggatattatccaaaggtttggtattgagcactattttgctgaggaaataaaagtggctcttgaaaat |
28568258 |
T |
|
| Q |
304 |
ttgcatttgatattgaacaccaatcctat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28568257 |
ctgcatttgatattgaacaccaatcctat |
28568229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 299
Target Start/End: Complemental strand, 20618700 - 20618506
Alignment:
| Q |
104 |
tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa |
203 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||||||||||||| || ||||||||| ||||||||||| | |||||||||| | | |||||||||| |
|
|
| T |
20618700 |
tatttcaatgttatgatcaatat-ctgttctacattttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttac |
20618602 |
T |
|
| Q |
204 |
aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttga |
299 |
Q |
| |
|
| |||||||| | ||| |||| ||||||| || |||||||||| | ||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
20618601 |
tagtgaagatccaactgagaattttcatttgattgacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtggctcttga |
20618506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28575414 - 28575353
Alignment:
| Q |
1 |
ctataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtat |
62 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
28575414 |
ctataaacaccgaatcaagtctgttttattatcaaagcattaatttctagaatggtaagtat |
28575353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 28568554 - 28568517
Alignment:
| Q |
25 |
tttactatcaaagcattaatttccagaatggtacgtat |
62 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
28568554 |
tttactatcaaagcattaatttctagaatggtaagtat |
28568517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 105 - 332
Target Start/End: Original strand, 4431 - 4656
Alignment:
| Q |
105 |
atttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaaa |
204 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
4431 |
atttcaatgttctgatcaat--gcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaa |
4528 |
T |
|
| Q |
205 |
atcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaact |
304 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| ||||||| ||||| ||||||||||| |||| ||| || || || |||||||||||||| |
|
|
| T |
4529 |
atcgaagatcccatggagagtttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatc |
4628 |
T |
|
| Q |
305 |
tgcatttgatattgaacaccaatcctat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4629 |
tgcatttgatattgaacaccaatcctat |
4656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 105 - 332
Target Start/End: Original strand, 4635 - 4860
Alignment:
| Q |
105 |
atttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaaa |
204 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
4635 |
atttcaatgttctgatcaat--gcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaa |
4732 |
T |
|
| Q |
205 |
atcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaact |
304 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| ||||||| ||||| ||||||||||| |||| ||| || || || |||||||||||||| |
|
|
| T |
4733 |
atcgaagatcccatggagagtttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatc |
4832 |
T |
|
| Q |
305 |
tgcatttgatattgaacaccaatcctat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4833 |
tgcatttgatattgaacaccaatcctat |
4860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 104 - 273
Target Start/End: Original strand, 3159 - 3328
Alignment:
| Q |
104 |
tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa |
203 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3159 |
tatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaa |
3258 |
T |
|
| Q |
204 |
aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactacttt |
273 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
3259 |
aatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt |
3328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3045 - 3111
Alignment:
| Q |
1 |
ctataaacattgaatcaagtccgt-----tttactatcaaagcattaatttccagaatggtacgtat |
62 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3045 |
ctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtat |
3111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 3159 - 3270
Alignment:
| Q |
104 |
tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa |
203 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3159 |
tatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaa |
3258 |
T |
|
| Q |
204 |
aatcgaagatcc |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3259 |
aatcgaagatcc |
3270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3045 - 3111
Alignment:
| Q |
1 |
ctataaacattgaatcaagtccgt-----tttactatcaaagcattaatttccagaatggtacgtat |
62 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3045 |
ctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtat |
3111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34812937 - 34812992
Alignment:
| Q |
1 |
ctataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggt |
56 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
34812937 |
ctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggt |
34812992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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