View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18999_low_18 (Length: 280)

Name: NF18999_low_18
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18999_low_18
NF18999_low_18
[»] chr1 (1 HSPs)
chr1 (1-280)||(45514802-45515081)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 45514802 - 45515081
Alignment:
Q  1 gcaaacaccttcccttcattgcaaattcttatattgcgacaaaatatgtttagcgctagtattccttcacaactatgtcaactcaaatcactccaaattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45514802 gcaaacaccttcccttcattgcaaattcttatattgcgacaaaatatgtttagcgctagtattccttcacaactatgtcaactcaaatcactccaaattc 45514901  T
Q  101 tggacctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatcatcatcagttcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45514902 tggacctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatcatcatcagttcatat 45515001  T
Q  201 gcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctccta 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45515002 gcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctccta 45515081  T

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