View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18999_low_22 (Length: 257)

Name: NF18999_low_22
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18999_low_22
NF18999_low_22
[»] chr6 (4 HSPs)
chr6 (43-250)||(11019332-11019539)
chr6 (111-238)||(11080104-11080231)
chr6 (111-251)||(11002950-11003090)
chr6 (39-151)||(11050445-11050557)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 11019539 - 11019332
Alignment:
Q  43 gcatggacacacatttcgaattttattccatctaaagaattatttctaattttcaacgaagaaggaaaggggaatttggtgatacactattccaagaagc 142  Q
    |||||||||||| |||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11019539 gcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagc 11019440  T
Q  143 atgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgcttccttagcacatattttcattttcaaaatcctc 242  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  11019439 atgctccctccatgaatctcccaactttttcaaatcaacaagagaagatccacctcctcctcttgcctccttagcacttattttcattttcaaaatcctc 11019340  T
Q  243 tctttaat 250  Q
    ||||||||    
T  11019339 tctttaat 11019332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 11080231 - 11080104
Alignment:
Q  111 ggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgctt 210  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  11080231 ggggaatttggagatacactagtccaagaagcatgctccctccaagaatctcctaactttttcaaatcaacaagagaagatccacctcctcctcttgctt 11080132  T
Q  211 ccttagcacatattttcattttcaaaat 238  Q
    ||||||||| ||||||||| ||||||||    
T  11080131 ccttagcacttattttcatcttcaaaat 11080104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 11003090 - 11002950
Alignment:
Q  111 ggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgctt 210  Q
    ||||||||||| |||| |||| || ||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||||||||| |||| |    
T  11003090 ggggaatttggagataaactagtcaaagaagcatgctccctccaagaatctcctaaccttttcaaatcaacaagagaagatccacctcctccttttgcct 11002991  T
Q  211 ccttagcacatattttcattttcaaaatcctctctttaatc 251  Q
    ||||||||| | ||||||| ||||||||  ||||| |||||    
T  11002990 ccttagcacttgttttcatcttcaaaattgtctctctaatc 11002950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 11050557 - 11050445
Alignment:
Q  39 attggcatggacacacatttcgaattttattccatctaaagaattatttctaattttcaacgaagaaggaaaggggaatttggtgatacactattccaag 138  Q
    |||||||||||||||| |||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||||||    
T  11050557 attggcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaagtgaaatttgatgataaactattccaag 11050458  T
Q  139 aagcatgctctct 151  Q
    |||||| ||||||    
T  11050457 aagcatcctctct 11050445  T

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