View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_23 (Length: 254)
Name: NF18999_low_23
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_23 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 1363327 - 1363562
Alignment:
| Q |
19 |
gacctttccctcttcccatagttggaaacctctttgtaatgaacaacaagccacataaatcattagccaaacttgccaaaatttatggtccaatattaag |
118 |
Q |
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| T |
1363327 |
gacctttccctcttcccatagttggaaacctctttgtaatgaacaacaaaccacataaatcattagccaaacttgccaaaatttatggtccaatattaac |
1363426 |
T |
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| Q |
119 |
tttaaagctaggtcaagtaacaaccatagttatctcttcgcccgaaatggccaaagagatactccaaacacatgattctttactttcagaccgaactgta |
218 |
Q |
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| T |
1363427 |
tttaaagctaggtcaagtaacaaccatagttatctcttcgcccgacatggccaaagagatactccaaacacatgattctttactttcagaccgaactgta |
1363526 |
T |
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| Q |
219 |
ccacatgctttaaccgctttcaaccacgaccaattt |
254 |
Q |
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| T |
1363527 |
ccacatgctttaaccgctttcaaccacgaccaattt |
1363562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 1408097 - 1407862
Alignment:
| Q |
19 |
gacctttccctcttcccatagttggaaacctctttgtaatgaacaacaagccacataaatcattagccaaacttgccaaaatttatggtccaatattaag |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1408097 |
gacctttccctcttcccatagttggaaatctctttgtaatgaacaacaaaccacataaatcattagccaaacttgccaaaatttatggtccaatattaac |
1407998 |
T |
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| Q |
119 |
tttaaagctaggtcaagtaacaaccatagttatctcttcgcccgaaatggccaaagagatactccaaacacatgattctttactttcagaccgaactgta |
218 |
Q |
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| T |
1407997 |
tttaaagctaggtcaagtaacaaccatagttatctcttcgcccgacatggccaaagagatactccaaacacatgattctttactttcagaccgaactgta |
1407898 |
T |
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| Q |
219 |
ccacatgctttaaccgctttcaaccacgaccaattt |
254 |
Q |
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| T |
1407897 |
ccacatgctttaaccgctttcaatcacgaccaattt |
1407862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 1368845 - 1369079
Alignment:
| Q |
19 |
gacctttccctcttcccatagttggaaacctctttgtaatgaacaacaagccacataaatcattagccaaacttgccaaaatttatggtccaatattaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1368845 |
gacctttccctcttcccatagttggaaacctctttgtaatgaacaacaagccacataaatcattagccaaacttgccaaaatttatggtccaatattaag |
1368944 |
T |
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| Q |
119 |
tttaaagctaggtcaagtaacaaccatagttatctcttcgcccgaaatggccaaagagatactccaaacacatgattctttactttcagaccgaactgta |
218 |
Q |
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| T |
1368945 |
tttaaaactaggccaagtaacaaccatagttgtctcttcggccgacttggccaaagagatactccaaactcatgattccttactctcggaccgtaccgta |
1369044 |
T |
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| Q |
219 |
ccacatgctttaaccgctttcaaccacgaccaatt |
253 |
Q |
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| T |
1369045 |
cctcatgctttaaccgctttcaaccacgaccaatt |
1369079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 29975389 - 29975270
Alignment:
| Q |
75 |
aaatcattagccaaacttgccaaaatttatggtccaatattaagtttaaagctaggtcaagtaacaaccatagttatctcttcgcccgaaatggccaaag |
174 |
Q |
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||||| ||||||||| | || |||||||||| ||||| | ||| |||| ||||||||| |||| ||||||||| ||||||| || |||||||||||| |
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| T |
29975389 |
aaatccttagccaaattagctgaaatttatggaccaatcatgagtctaaaactaggtcaaataaccaccatagttgtctcttcacctaaaatggccaaag |
29975290 |
T |
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| Q |
175 |
agatactccaaacacatgat |
194 |
Q |
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| T |
29975289 |
aaatactccaaacccatgat |
29975270 |
T |
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