View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_24 (Length: 252)
Name: NF18999_low_24
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_24 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 1407283 - 1407516
Alignment:
| Q |
19 |
tggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactccttt |
118 |
Q |
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| T |
1407283 |
tggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagattagaaaatacatgtagtaaatgttgaattttttctctgtccaactccttt |
1407382 |
T |
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| Q |
119 |
ttgttttcttcagcgagcaacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaaga |
218 |
Q |
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| T |
1407383 |
ttgttttcttcagcgagcaacgagtctaacatatcgttgttggcgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaaga |
1407482 |
T |
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| Q |
219 |
taccaaacaactttcctacataaaacacataggt |
252 |
Q |
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| T |
1407483 |
taccaaacaactttcctacataaaacacataggt |
1407516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 252
Target Start/End: Complemental strand, 1364121 - 1363908
Alignment:
| Q |
37 |
atcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc |
136 |
Q |
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| T |
1364121 |
atcaaacatcataattgtaaatagtaaga--ttagaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc |
1364024 |
T |
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| Q |
137 |
aacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttccta |
236 |
Q |
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| T |
1364023 |
aaggagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaagataccaaacaactttccta |
1363924 |
T |
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| Q |
237 |
cataaaacacataggt |
252 |
Q |
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| T |
1363923 |
cataaaacacataggt |
1363908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 1369656 - 1369456
Alignment:
| Q |
58 |
tagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcag------cgagcaacgagtctaacata |
151 |
Q |
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| T |
1369656 |
tagtaagggattagaaaatacatgtaataaatgttcaattttttctctatccaactcctttctgttttcttcaggaatgtcgagcaaggagtctagcatg |
1369557 |
T |
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| Q |
152 |
tcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttcctacataaaacacatagg |
251 |
Q |
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| T |
1369556 |
tcgttgttggtgaaaaaaccatcctcttctcgcaacttcaacctttggtcgattatgttgtcgaagacattgaacaactttccaatataaaacatatagg |
1369457 |
T |
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| Q |
252 |
t |
252 |
Q |
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| T |
1369456 |
t |
1369456 |
T |
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