View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_26 (Length: 243)
Name: NF18999_low_26
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 6029863 - 6030003
Alignment:
| Q |
75 |
aatactgaaataagactatatgcatattctccatctcctagt-gatataggtcacaaaaatttgtgcaatatgtcgtatgatcctaaaggttcctaataa |
173 |
Q |
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| T |
6029863 |
aatactgaaataagactatatgcatgttctccatctcctagttgatataggtcacaaaaatttgtgcaatatgtcatatgatcctaaaggttcctaataa |
6029962 |
T |
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| Q |
174 |
atgcaacttttatgttatcagtttgtttgttgtttgtaact |
214 |
Q |
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| T |
6029963 |
atgcaacttttatgttatcagtttgtttgttgtttgtaact |
6030003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 6029796 - 6029840
Alignment:
| Q |
14 |
aatatcaaagagatgatagcattggaggagaagatttatttagtt |
58 |
Q |
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| T |
6029796 |
aatatcaaagagatgatagcattggaggagaagatttatttagtt |
6029840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 6030479 - 6030531
Alignment:
| Q |
159 |
aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta |
211 |
Q |
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| T |
6030479 |
aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgta |
6030531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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