View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_28 (Length: 238)
Name: NF18999_low_28
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_28 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 39451325 - 39451545
Alignment:
| Q |
18 |
gatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgag |
117 |
Q |
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| T |
39451325 |
gatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgag |
39451424 |
T |
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| Q |
118 |
acaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccgtcctaag |
217 |
Q |
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| T |
39451425 |
acaacgttgattcaactcagttgcagcagcagaaagagttagccatcccgactttcgctcacttgtttccttcaagctcattgcctggttccgtcctaag |
39451524 |
T |
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| Q |
218 |
caaggaatgggaaccgttttt |
238 |
Q |
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| T |
39451525 |
caaggaatgggaaccgttttt |
39451545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 39460572 - 39460734
Alignment:
| Q |
18 |
gatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgag |
117 |
Q |
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| T |
39460572 |
gatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagag |
39460671 |
T |
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| Q |
118 |
acaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaact |
180 |
Q |
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| T |
39460672 |
acaacgtagattcaaatcagttgcagcagcagactgaattggccataccaactttcgccaact |
39460734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 39455060 - 39455172
Alignment:
| Q |
126 |
gattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccgtcctaagcaaggaat |
225 |
Q |
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| T |
39455060 |
gattcaactcagttgctgcagcagaacgagttagccattccgactttcaccaatttgtttccttcaaactcattgccacgttccctgctaagcaaggaat |
39455159 |
T |
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| Q |
226 |
gggaaccgttttt |
238 |
Q |
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| T |
39455160 |
ggaaaccggtttt |
39455172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 39458135 - 39457996
Alignment:
| Q |
27 |
aaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttg-aatcttcatattcataccctccgtgaacgagacaacgtt |
125 |
Q |
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| T |
39458135 |
aaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaaatcttcatattcataatatgtttgaacgagacaacgtt |
39458036 |
T |
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| Q |
126 |
gattcaactcagttgcagcaacagaaagagttagccatcc |
165 |
Q |
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| T |
39458035 |
gattccactcagttgctgcagcagactgagttggccatcc |
39457996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 39475855 - 39475992
Alignment:
| Q |
42 |
cctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgc |
141 |
Q |
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|||| |||||| |||||||||||||| |||||||||||||||||||||||| | || | || || |||||||||||||| || ||||| |||||| ||| |
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| T |
39475855 |
cctacgctcgttttcttcacttctggtgttgcttcccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgc |
39475954 |
T |
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| Q |
142 |
agcaacagaaagagttagccatcccgactttcgccaac |
179 |
Q |
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| T |
39475955 |
tgctgcagaacgaggtagccatcccgagtttcgccaac |
39475992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 39486790 - 39486952
Alignment:
| Q |
18 |
gatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgag |
117 |
Q |
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| T |
39486790 |
gatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttgatgctccatcttcacactctgtttgaacgag |
39486889 |
T |
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| Q |
118 |
acaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaact |
180 |
Q |
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| T |
39486890 |
acaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaact |
39486952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 39483633 - 39483743
Alignment:
| Q |
69 |
gttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccga |
168 |
Q |
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|||||||||||||||||||||||| || |||| || || |||||||||||||| | |||| |||||| ||| |||| |||||||| ||||||||||| |
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| T |
39483633 |
gttgcttcccttggtttgaatctttatcttcacactcttcgtgaacgagacaatatcgatttgactcagctgctgcaagagaaagaggcagccatcccga |
39483732 |
T |
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| Q |
169 |
ctttcgccaac |
179 |
Q |
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| T |
39483733 |
gttttgccaac |
39483743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 39464369 - 39464276
Alignment:
| Q |
54 |
ttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcaac |
147 |
Q |
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| T |
39464369 |
ttcttcacttcgagtgttgctttccttggtttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaac |
39464276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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