View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_29 (Length: 237)
Name: NF18999_low_29
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 19073234 - 19073017
Alignment:
| Q |
4 |
ttgctattattatattataattcttggtaaaactcatagatgagaaaaaactacaagagaaataaattgatgtcaagagaattgtatatatgaagggata |
103 |
Q |
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| T |
19073234 |
ttgctattattatattataattcttggtaaaactcatagatgagaaaaaactacaagagaaataaattgatgtcaagagaattgtatatatgaagggata |
19073135 |
T |
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| Q |
104 |
caacaatgttcttatagtcaatgagaacaactgtcctcatgaacttacctcagttgatagagataatgatgatatatataatgttcggagttcaaactcc |
203 |
Q |
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| T |
19073134 |
caacaatgttcttatagtcaatgagaacaactgtcgtcatgaacttacctcagttgatagagataatgatgatatatgtaatgttcggagttcaaacccc |
19073035 |
T |
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| Q |
204 |
gacgacaaaagaaaaatc |
221 |
Q |
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| T |
19073034 |
gacgacaaaaaaaaaatc |
19073017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 34345422 - 34345338
Alignment:
| Q |
136 |
gtcctcatgaacttacctcagttgatagagataat-gatgatatatataatgttcggagttcaaactccgacgacaaaagaaaaa |
219 |
Q |
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| T |
34345422 |
gtcctcatgaacttatctcagttgatatagataatacataatatatgtaaggtctagagtttaaactccgaccacaaaaaaaaaa |
34345338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 25999398 - 25999475
Alignment:
| Q |
143 |
tgaacttacctcagttgatagagataatg-atgatatatataatgttcggagttcaaactccgacgacaaaagaaaaa |
219 |
Q |
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|||||||| |||||||| ||| || |||| || |||||||||| |||| |||||||||||||||| |||||| ||||| |
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| T |
25999398 |
tgaacttagctcagttggtagggacaatgcataatatatataaggttccgagttcaaactccgaccacaaaaaaaaaa |
25999475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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